Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30255
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 52 3e-07
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 43 1e-04
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 38 0.004
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 36 0.016
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 36 0.021
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 34 0.065
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 31 0.35
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 30 0.80
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 1.8
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 29 1.8
09_04_0445 - 17677126-17677512,17677608-17678564 29 1.8
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 28 3.2
03_02_0582 + 9624481-9626844 27 9.8
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 51.6 bits (118), Expect = 3e-07
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 48 YADKFATRCKGCGNPIVDKAIIA-LDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 224
+A + C GC NPI ++ +D+ WH CF C C P+++ F++ E+QP C
Sbjct: 249 FASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSC 308
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 48 YADKFATRCKGCGNPIVDKAIIA-LDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 224
++ F T C GC + I ++ + A WH +CF C C P+ D FS+ N P C
Sbjct: 551 FSSGFRT-CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTC 609
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 37.9 bits (84), Expect = 0.004
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 72 CKGCGNPIVDKAIIA-LDAKWHRDCFTCMKCRNPVTD 179
C GC PI ++ +D+ WH CF C C P+++
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 35.9 bits (79), Expect = 0.016
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
+C CG + +A D + +HR CF C C+ + S +S +E C
Sbjct: 12 KCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYC 61
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 35.5 bits (78), Expect = 0.021
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
+CK C + ++ D +HR CF C C++ ++ +S +E P C
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYC 57
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 33.9 bits (74), Expect = 0.065
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 72 CKGCGNPIVDKAIIA-LDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
C GC + I ++ L WH CF C CR+P+ + + ++ C K
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEVTFLQFSLECLK 164
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
+CK C + ++ D +H+ CF C C+ ++ +S M+ C
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYC 58
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 30.3 bits (65), Expect = 0.80
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
+C C + ++ D+ +H+ CF C C+ ++ ++S M+ C
Sbjct: 9 KCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYC 58
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 66 TRCKGCGNPI--VDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
T+C C + VDK + A + +H+ CF C C+ + + ++ E C
Sbjct: 10 TKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYC 60
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = -1
Query: 190 ENVESVTGFLHFMHVKQSRCHLASSAMMALSTIGFPHPLQRVANLSA 50
ENV+ + G+ H+K ++ ++ + L++ H L + N+ +
Sbjct: 835 ENVDKIVGYAVSYHLKHNKVEISKDGKLVLASESLKHGLNMLQNMQS 881
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 215 AEWLVFHHGECRIG--HWIPAL 156
A W +FHHGE R+G W+ +L
Sbjct: 180 ARWALFHHGEVRLGMSPWLTSL 201
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
+C C + ++ D +H+ CF C C+ ++ ++S M+ C
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYC 58
>03_02_0582 + 9624481-9626844
Length = 787
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 230 LSAFTAEWLVFHHGECRIGHWIPALHAREAIAVPLS 123
L+ A W + HHGE R P + +EAI+ +S
Sbjct: 407 LAEHNAAWQLKHHGEGRGYGGKPGMSLKEAISASIS 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,015
Number of Sequences: 37544
Number of extensions: 224160
Number of successful extensions: 575
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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