Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30255
(466 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 77 1e-14
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 69 3e-12
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 65 3e-11
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 61 5e-10
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 46 2e-05
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 45 4e-05
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 43 1e-04
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 42 2e-04
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 42 2e-04
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 42 3e-04
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 35 0.038
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 34 0.050
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 34 0.050
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 0.27
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 31 0.36
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25) 31 0.62
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 0.82
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.82
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 29 1.4
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 1.4
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 1.4
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 29 1.9
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3) 28 3.3
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24) 28 3.3
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 28 4.4
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16) 28 4.4
SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9) 28 4.4
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 27 5.8
SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10) 27 5.8
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09) 27 7.7
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 76.6 bits (180), Expect = 1e-14
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTF 188
F E+ G+PYC Y D FA RC C PI+D + ALD WH + F C +C NP D+ F
Sbjct: 320 FFERDGKPYCERDYHDTFAPRCAYCNGPILDSCVTALDQTWHPEHFVCAECGNPFGDTGF 379
Query: 189 SVMENQPLC 215
+ +P C
Sbjct: 380 HERDGKPFC 388
Score = 42.7 bits (96), Expect = 1e-04
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 72 CKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
C C PI+ + AL WH + F C+ C P+ F + +P C
Sbjct: 282 CAACNKPIIGQVCTALGKTWHPEHFACVACEAPLGTQNFFERDGKPYC 329
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 6 GFMEQAGRPYCSDCYADKFATRC 74
GF E+ G+P+C + Y FA RC
Sbjct: 378 GFHERDGKPFCREDYYAMFAPRC 400
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 68.5 bits (160), Expect = 3e-12
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKA-IIALDAKW-HRDCFTCMKCRNPVTDS 182
F +Q GR C +CY +++A RC C N I +A D K+ HR+CFTC KC P+
Sbjct: 275 FTKQEGRNVCQNCYRERYAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLAGE 334
Query: 183 TFSVMENQPLCGKC 224
F + + + +C C
Sbjct: 335 KFRIRDGEKICLPC 348
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTF 188
F+ + R C++C+ KFA C C I ++ + +H +CFTC C P+ S F
Sbjct: 216 FIRRDERRLCNNCFDSKFAKVCVKCNQVIKTSSVQHAGSTYHSECFTCHHCDKPLAGSPF 275
Query: 189 SVMENQPLCGKC 224
+ E + +C C
Sbjct: 276 TKQEGRNVCQNC 287
Score = 35.1 bits (77), Expect = 0.029
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +3
Query: 6 GFMEQAGRPYCSDCYADKFATRCKGCGNPIV--DKAIIALDAKWHRDCFTCMKCRNPVTD 179
GF + + C C + C C +K + +H CF C +C+ P+
Sbjct: 154 GFTLKDEKLICHGCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIGS 213
Query: 180 STFSVMENQPLCGKC 224
F + + LC C
Sbjct: 214 KQFIRRDERRLCNNC 228
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +3
Query: 72 CKGCGNPIV--DKAIIAL----DAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
CK C P+ D A+ A D+ WH CFTC + + D + +++ C
Sbjct: 80 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYCSKDDEIYC 133
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 64.9 bits (151), Expect = 3e-11
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 6 GFMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDST 185
GF+ + +C CY KF+ RC CG P+++ ++ WH+ CF+C C + +
Sbjct: 441 GFVPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAA 500
Query: 186 FSVMENQPLCGKC 224
FSV + C +C
Sbjct: 501 FSVRDGCRYCMEC 513
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPI-VDKAIIAL--DAKWHRDCFTCMKCRNPV-T 176
F+ + +P C+DC+ D +A C+ C I + I+ D WH CF C CR P+ +
Sbjct: 318 FIVRGDKPVCTDCFKDSYAHECEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKS 377
Query: 177 DSTFSVMENQPLCGKC 224
D F+ +Q LC C
Sbjct: 378 DGKFTFYRDQILCNNC 393
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALD-AKWHRDCFTCMKCRNPVTDST 185
F + G YC +CY +A +C+ C IV L+ + +H++CF C +C +
Sbjct: 501 FSVRDGCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEG 560
Query: 186 FSVMENQPLCGKCA 227
F ++ LCG CA
Sbjct: 561 FVREGDELLCGDCA 574
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +3
Query: 36 CSDCYADKFATRCKGCGNPIVDKAIIALDAK---WHRDCFTCMKCRNPVTDSTFSVMENQ 206
C++CY + C CG ++D L+ WH +CF C C + S F ++
Sbjct: 390 CNNCYVANYQKECFACGQ-MIDSGASRLEYSGNFWHENCFRCANCGEAIGTSGFVPKDDT 448
Query: 207 PLCGKC 224
C C
Sbjct: 449 FFCPGC 454
Score = 35.1 bits (77), Expect = 0.029
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 111 IALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 224
+A++ WH F C C + +T F V ++P+C C
Sbjct: 293 VAMNKNWHLGHFQCQTCDHSITGRQFIVRGDKPVCTDC 330
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 64.9 bits (151), Expect = 3e-11
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 6 GFMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDST 185
GF+ + +C CY KF+ RC CG P+++ ++ WH+ CF+C C + +
Sbjct: 29 GFVPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAA 88
Query: 186 FSVMENQPLCGKC 224
FSV + C +C
Sbjct: 89 FSVRDGCRYCMEC 101
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALD-AKWHRDCFTCMKCRNPVTDST 185
F + G YC +CY +A +C+ C IV L+ + +H++CF C +C +
Sbjct: 89 FSVRDGCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEG 148
Query: 186 FSVMENQPLCGKCA 227
F ++ LCG CA
Sbjct: 149 FVREGDELLCGDCA 162
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 129 WHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 224
WH +CF C C + S F ++ C C
Sbjct: 11 WHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/74 (35%), Positives = 34/74 (45%)
Frame = +3
Query: 3 GGFMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDS 182
G F + GRPYC Y K T C C PI + I A+ K+H + F C C +
Sbjct: 2 GSFFDHDGRPYCEMHYHAKRGTLCYSCQKPITGRCITAMHRKFHPEHFVCAFCLKQLNKG 61
Query: 183 TFSVMENQPLCGKC 224
TF ++P C C
Sbjct: 62 TFKEQNDKPYCHPC 75
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVD--KAIIALDAKWHRDCFTCMKCRNPVTDS 182
F + R C DC +A RC C I K + + +H DCF C +CR P+
Sbjct: 40 FQMRDDRKVCKDCNRIHYAKRCVACRQYIEGTVKFVTRDEGTYHSDCFVCSRCRKPLAGK 99
Query: 183 TFSVMENQPLCGKC 224
TF+ E +C C
Sbjct: 100 TFTEHEGSWVCDDC 113
Score = 51.6 bits (118), Expect = 3e-07
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPI-VDKAIIALDAK-WHRDCFTCM--KCRNPVT 176
F E G C DCY D++A RC C + + + D K +H +CF C +CR P++
Sbjct: 101 FTEHEGSWVCDDCYHDRYAKRCNMCHQSLEANVEFVKYDEKLYHNECFVCQNPRCRKPLS 160
Query: 177 DSTFSV-MENQPLCGKC 224
+ F++ + + +C C
Sbjct: 161 GAKFALKSDGRRMCLNC 177
Score = 41.9 bits (94), Expect = 3e-04
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 72 CKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 224
C C I + + H +CF C CR P+ TF + +++ +C C
Sbjct: 2 CNSCFKTITSSVVRYQNKPHHSECFVCFHCRTPLAGKTFQMRDDRKVCKDC 52
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPVTDSTFS 191
+C GC PI DK ++ LD WH C C C+ P+T+ FS
Sbjct: 4 QCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFS 45
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 24 GRPYCSDCYADKFATRCKGCGNPIVDKAII--ALDAKWHRDCFTCMKCRNPVT--DSTFS 191
G+ +C + ++ T+C GC I ++ A +H DCF C C+ +T D +
Sbjct: 48 GKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYY 107
Query: 192 VMENQPLC 215
+ + +C
Sbjct: 108 IGDGSFIC 115
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 33 YCSDCYADKFATRCKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPVTDSTFSVMENQP 209
YC YA++F RC C I + A D WH+ F C++C + + QP
Sbjct: 361 YCGRHYAEQFKPRCAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQLYVARGGQP 420
Query: 210 LCGKC 224
C +C
Sbjct: 421 HCLEC 425
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = +3
Query: 72 CKGCGNPIV--DKAIIAL----DAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
C C P++ + A+ A D WH CF C C N + D + + CG+
Sbjct: 309 CFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVDLIYFYKDGVIYCGR 364
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKA 107
++ + G+P+C +CY +A C C I A
Sbjct: 413 YVARGGQPHCLECYDKYYAKHCMSCKKNIAADA 445
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 72 CKGCGNPIV-DKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
C GCG I +A++AL+ +WH CF+C KC + + + M+ +P C K
Sbjct: 89 CAGCGEAIKGSQALLALEKQWHLWCFSCTKC-HCLLSLEYMGMDGKPYCEK 138
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 33 YCSDCYADKFATRCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQP 209
YC D Y +++ +C C ++ II++ K +H CF C CR P S +
Sbjct: 6 YCKDDYQNQYGKKCDSC-QLYLEGEIISIHGKNFHEACFACNSCRQPFPPSDKIIFTGTD 64
Query: 210 -LCGKC 224
LC C
Sbjct: 65 YLCQTC 70
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPIVDKAI 110
+M G+PYC Y + F C C I K +
Sbjct: 127 YMGMDGKPYCEKDYQELFGVTCAACNGYITGKVL 160
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 33 YCSDCYADKFATRCKGCGNPI-VDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQP 209
YC +A+ RC C I ++ A D+ WH F C +C P+ + + +N+P
Sbjct: 130 YCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVMRDNKP 189
Query: 210 LCGKC 224
C C
Sbjct: 190 YCCHC 194
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 9 FMEQAGRPYCSDCYADKFATRCKGCGNPI-VDKAIIALDAK-WH--RDCFTCMKCRNPVT 176
++ + +PYC C+ +A C CG PI D + +A + + WH +CF+C C +
Sbjct: 182 YVMRDNKPYCCHCFESLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALL 241
Query: 177 DSTFSVMENQPLC 215
F + C
Sbjct: 242 GLPFLPKSGEIYC 254
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 30 PYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQP 209
P S+ Y+ K C G+ V + WH CF C C+ + D + +++
Sbjct: 70 PEMSEGYSCKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYFYKDSKV 129
Query: 210 LCGK 221
CG+
Sbjct: 130 YCGR 133
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 24 GRPYCSDCYADKFATRCKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPVTDSTFS 191
G+P +C + C GC PI D+ ++ +D WH C C CR+ ++ S FS
Sbjct: 32 GKP--QNCGQNGRVNICTGCNEPIEDRFLMKVVDEAWHESCLQCCICRSQLSRSCFS 86
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 33 YCSDCYADKFATRCKGCGNPIVDKAII--ALDAKWHRDCFTCMKCRNPV-TDSTFSVMEN 203
YC Y F T+C GC I ++ AL +H CF C C + + F++ +N
Sbjct: 92 YCRTDYEKVFGTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDN 151
Query: 204 QPLC 215
+ C
Sbjct: 152 KLYC 155
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 GRPYCSDCYADKFATRCKGCGNPI--VDKAIIALDAKWHRDCFTCMKCRNPV-TDSTFSV 194
G+ YC YA +F T+C CG I D A + +H CF C C+ + T F++
Sbjct: 147 GKIYCKADYARQFGTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFAL 206
Query: 195 MENQPLC 215
+ LC
Sbjct: 207 KDGHVLC 213
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKC 161
RC GC IVD+ ++ + + WH C C C
Sbjct: 101 RCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLC 132
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 41.5 bits (93), Expect = 3e-04
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 39 SDCYADKFATRCKGCGNPIVDKA-IIALDAKWHRDCFTCMKC 161
+D DK C GCG+ I+++ ++A+D +WH DC C C
Sbjct: 237 ADQMGDKQQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDC 278
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 36 CSDCYADKFATR-CKGCGNPIVDKAII--ALDAKWHRDCFTCMKCR 164
C + Y +F+ + C C I K ++ A D +H +CF C +C+
Sbjct: 297 CREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCK 342
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 72 CKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNP 170
C CG P+ D+ + AL WH + F C KC P
Sbjct: 81 CFCCGRPVEDRVVHALGKAWHVEHFVCAKCEKP 113
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 84 GNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTF 188
G ++ + I A+ A WH DCF C C + + D+ F
Sbjct: 18 GKFVIGRVIKAMQANWHPDCFRCEICNDCLADTGF 52
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 34.7 bits (76), Expect = 0.038
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 45 CYADKFATRCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
C AD +C CG+ + ++++ K+H+ CF+C CR + DST + + GK
Sbjct: 36 CVADNMP-KCPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKL-DSTNAASHD----GK 89
Query: 222 C 224
C
Sbjct: 90 C 90
Score = 31.5 bits (68), Expect = 0.36
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 108 IIALDAKWHRDCFTCMKCRNPVTDSTFSV 194
++ WH+ CF C KC + +T +V
Sbjct: 231 VLGAGFNWHKSCFNCYKCHKKLDSTTVAV 259
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 72 CKGCGNPIVDKAII--ALDAKWHRDCFTCMKCRNP-VTDSTFSVMENQPLC-GKCA 227
C C PI ++ A + +H +CF C +CR V F +N+ LC +CA
Sbjct: 81 CSHCNKPIAAFELVMRARNNAYHIECFGCQRCRKRLVVGEAFCFHDNKVLCLDRCA 136
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 34.3 bits (75), Expect = 0.050
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 69 RCKGCGNPIVD-KAIIALDAKWHRDCFTCMKCRNPVTDST 185
+C C + + +A+ KWH+ C TC KC N DST
Sbjct: 9 KCPRCSKTVYKAEERLAIGKKWHKSCLTC-KCCNKSLDST 47
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDAKWHRDCFTCMKC 161
RC CG DK +A +K H FTC KC
Sbjct: 91 RCPTCGIVCSDKKQLAKHSKTHLKTFTCKKC 121
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 31.5 bits (68), Expect = 0.36
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 48 YADKFATRCKGCGNPI-VDKAIIALDAK--WHRDCFTCMKC 161
+ D+ T C C PI A+ + K WH DCF+C+ C
Sbjct: 2024 HGDRNVT-CASCSQPIRKSMAVYVSELKRYWHDDCFSCVVC 2063
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 66 TRCKGCGNPI-VDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVM-ENQPLC 215
T C CG + + + ++A +HR CF C +C + + T++ E++ C
Sbjct: 609 TACLICGERVYLMERLVAERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)
Length = 294
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 202 FSITENVESVTGFLHFMHVKQSRCHLASSAMMALS 98
FS+ + +V ++ FM++KQ +C + + M AL+
Sbjct: 21 FSLAGEILTVAAYIAFMNIKQEQCQIRVNLMFALA 55
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 135 RDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
RDCFT C P TD+ ++N P C +
Sbjct: 2269 RDCFTGSNCPGPRTDTKKCKVQNCPTCSQ 2297
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 135 RDCFTCMKCRNPVTDSTFSVMENQPLCGK 221
RDCFT C P TD+ ++N P C +
Sbjct: 247 RDCFTGSNCPGPRTDTKKCKVQNCPTCSQ 275
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 123 AKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
A WH+ CF C C + T+ + P C
Sbjct: 211 AVWHKGCFKCESCGMTLNMKTYKGYQKLPYC 241
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 69 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDST 185
+C C P+ + K WH+ C TC C N DST
Sbjct: 4 KCPRCEKPVYFAEQAKANGKSWHKPCLTCKHC-NKRLDST 42
>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 997
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 245 YICDELSAFTAEWLVFHHGECRIGHWIP 162
+ C+E +AFT W VF H R GH P
Sbjct: 755 FYCEEFAAFTKSW-VFEHRTGRQGHQQP 781
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +3
Query: 27 RPYCSDCYADKFATRCKGCGNPIV---DKAIIALDAKWHRDCF------TCMKCRNPVT 176
RP C C + A CK C P+ + ++ L + +D + TC C +PVT
Sbjct: 116 RPTCKTCTSPVTALTCKTCTFPVTALHARRVLHLSPPYMQDVYFTCHRPTCKTCTSPVT 174
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Frame = +3
Query: 27 RPYCSDCYADKFATRCKGCGNPIV---DKAIIALDAKWHRDCF------TCMKCRNPVTD 179
RP+ D Y CK C +P+ + ++ L + +D + TC C +PVT
Sbjct: 69 RPHMQDVYFTCHRPTCKTCTSPVTALHARRVLHLSPPYMQDVYFICHRPTCKTCTSPVTA 128
Query: 180 ST 185
T
Sbjct: 129 LT 130
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = +3
Query: 30 PYCSDCYADKFATRCKGCGNPIV---DKAIIALDAKWHRDCF------TCMKCRNPVT 176
PY D Y CK C +P+ + ++ L + +D + TC C +PVT
Sbjct: 187 PYMQDVYFTCHRPTCKTCTSPVTALHARRVLHLSPPYMQDVYFTCNRPTCKTCTSPVT 244
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +3
Query: 15 EQAGRPYCSDCYADKFATRCKGCGN--PIVDKAIIALDAKWHRDCFTCMKCRNP-VTDST 185
E GR Y + A C C P + + L +H CFTC C N V
Sbjct: 691 ESNGRTTTYKLYGNSGA--CAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDR 748
Query: 186 FSVMENQPLC 215
F V+ + C
Sbjct: 749 FHVVNGRLFC 758
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 60 FATRCKGCGNPIV--DKAIIALDAKWHRDCFTCMKC-RNPVTDSTFSVMENQPLC 215
F T+C C D + A + +H DCF C+ C R V F++ E+ C
Sbjct: 80 FGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFC 134
>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
Length = 698
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 281 KCYYTSRWGFY-LYICDELSAFTAEWL 204
+C T RW F LY C E+ T WL
Sbjct: 600 RCLVTRRWLFNTLYTCTEMGLVTRRWL 626
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 275 YYTSRWGFYLYICDELSAFTA-EWLVFHHGECRIGHWI 165
YY R GF + + DE + FTA + + F H C+ G ++
Sbjct: 2616 YYRPRVGFKVQVDDENARFTAKDGVCFAHDVCKGGAFV 2653
>SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)
Length = 201
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 125 SVKRDDGFIDDWISAPLAASGELVCIAIGA 36
S ++ GF + W S PL SGE++ + + A
Sbjct: 90 SKDKEAGFAESWFSRPLEKSGEVIPMPVPA 119
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +3
Query: 72 CKGCGNPIV--DKAIIAL----DAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 215
CK C P+ D A+ A D+ WH CFTC + + D + + + C
Sbjct: 193 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYCSKDAEIYC 246
>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
Length = 391
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 27 RPYCSDCYADKFATRCKGCGNPIVD 101
R +CS C DK + CG+PIVD
Sbjct: 12 RTHCSQC--DKIQKSIRKCGDPIVD 34
>SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9)
Length = 231
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 199 SITENVESVTGFLHFMHVKQSRCHLASSAMMA 104
S E+V F H VK RC+LA+S++ A
Sbjct: 183 STLESVSKSFRFSHRFRVKDERCYLAASSLRA 214
>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 229
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 27 RPYCSDCYADKFATRCKGCGNPIV---DKAIIALDAKWHRDC-FTCMKCRNPVTDSTFSV 194
RP C C A CK C +P+ + ++ L + +D FTC R + D F
Sbjct: 46 RPTCKTCTFPVIALTCKTCTSPVTALHARRVLHLSPPYMQDVYFTCH--RPHMQDVYFPC 103
Query: 195 MENQPLCGKC 224
++P C C
Sbjct: 104 --HRPTCKTC 111
>SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 19 RLAVPIAPIAMQTSSPLAARGAEIQSSIKPSSRLTLS 129
++ P P + + SPL A+I S + PSS +S
Sbjct: 255 KIMTPFTPSSAKIMSPLTTSSAKIMSPLTPSSAKIMS 291
>SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10)
Length = 206
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 108 IIALDAKWHRDCFTCMKCRNPVTDS 182
I+ D +W D C C NP+TD+
Sbjct: 41 IVCEDGRWSHDPPRCEDCVNPLTDT 65
>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
Length = 441
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 90 PIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPL 212
P+ +++ D R F + R PVT ST V+ NQP+
Sbjct: 292 PVSASSLVPEDGLKLRKHFNRTEIRYPVTSSTNRVVHNQPV 332
>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 449 NVDVQLV*NITNNLHVVTSAVLCFTVALSDFMIFLL-IPTLIHYT 318
N V L +T++LH T+ ++ ++A+SD M+ L +P IH T
Sbjct: 45 NATVCLTVFLTSSLHAFTNYIVA-SLAVSDLMVALFSLPFRIHQT 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,901
Number of Sequences: 59808
Number of extensions: 273504
Number of successful extensions: 681
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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