Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30255
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.30 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 55  TSSPLAARGAEIQSSIKPSSRLTLSGTAIAS 147
           + + L   GA++ + +   +RLTLSG AIAS
Sbjct: 391 SDNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 386 LCFTVALSDFMIFLLIPTLIHYT 318
           LC  + LS  M FLLI  +I  T
Sbjct: 269 LCINILLSQTMFFLLISEIIPST 291


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 68  SGELVCIAIGAIGTAS 21
           +GE VC A  A GTAS
Sbjct: 653 AGEYVCTAENAAGTAS 668


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 206 LVFHHGECRIGHWIPALHAREAIAVPLSVKRDDG 105
           +V+  GE  +   +PA+ +R  I +   +KR+ G
Sbjct: 365 VVYRPGENPVTQRLPAVLSRIGIILASPLKREGG 398


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 383 CFTVALSDFMIFLLI 339
           C T+  + F++F+L+
Sbjct: 79  CMTITFASFLLFILL 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,370
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)