Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30251
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   105   5e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   103   2e-23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.29 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    30   0.29 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.7  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    27   2.7  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.7  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   6.1  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   6.1  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.1  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.1  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  105 bits (253), Expect = 5e-24
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +3

Query: 27  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 207 MQVCVLGDQQHCDEAK 254
           M +C+LGD    D AK
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 37/53 (69%), Positives = 43/53 (81%)
 Frame = +1

Query: 511 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 669
           L VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 164 LGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216



 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +2

Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVL 162


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  103 bits (248), Expect = 2e-23
 Identities = 47/76 (61%), Positives = 58/76 (76%)
 Frame = +3

Query: 27  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 207 MQVCVLGDQQHCDEAK 254
           M +C+LGD    D AK
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +2

Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVL 162



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 34/53 (64%), Positives = 43/53 (81%)
 Frame = +1

Query: 511 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 669
           L VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 164 LGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 9    LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 173
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 511  LSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKKHW 612
            LS+A+G+++  P  L      N H+S+  L  L+K H+
Sbjct: 2706 LSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHY 2743


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 591 HKEVDGKMHILSKLIRSHVHMANCYRKTNTFFIWNLMVPLTSSIFCV 451
           ++++D    +L   +   VH+    R++NT F + L + ++  IFC+
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 517 VAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 645
           +  GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 201 IKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 313 LFVLIQFFQSLSIHTWHIQGLASSQCCWSPRTQTCIFGRGMYFSFTV 173
           L V +   Q +++  W +  L   Q  ++   QT     G + SFT+
Sbjct: 159 LLVFVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTI 205


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 490 PNEEGVGLSVAVGHVDMTPDE-LAQNVHLSI-NFLVSLLKKHWQNVRSLHMKS 642
           P+++G+   +      +T D+ L +N  L+  +F V LLK +W  +   H ++
Sbjct: 171 PHDKGIAACIEKNLTPITWDKNLVENHKLADRDFAVGLLKNYWSQLHEFHSEN 223


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 537 HDS**ACSECASFHQLPCVTAQETLAEC 620
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -2

Query: 249 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 70
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 69  RHSRTRRACH 40
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 472 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 365
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 544 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 696
           P E  +N H+   +  ++L+ HW+ + SL M++     Q    F+ +NFMT
Sbjct: 30  PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 299 SIFSKPQHPYMAHSRFSLVTMLLVSKNAN 213
           S+FSK QHP    S F     L++S + N
Sbjct: 60  SVFSKLQHPSFERSAFFTSVGLILSDDIN 88


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 116
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 60  VNAVLQSSKDKKRNFLETV 116
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,184
Number of Sequences: 5004
Number of extensions: 61636
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)