Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30250
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0030 + 290232-291020                                             29   2.7  
07_03_0073 - 13063209-13063403,13063489-13063579,13063707-130637...    29   3.5  
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261...    28   6.2  
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601...    28   8.2  
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425...    28   8.2  

>03_01_0030 + 290232-291020
          Length = 262

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 690 KSVCIQAYVG--EGLRGRFTPDCIGRTICCPC 601
           +S C++A       LR    PD IG  +CCPC
Sbjct: 215 RSKCMRALAACRPALRQSGWPDAIGSEVCCPC 246


>07_03_0073 -
           13063209-13063403,13063489-13063579,13063707-13063736,
           13063827-13063937,13064023-13064260,13064366-13064837,
           13065054-13065563,13065993-13066481
          Length = 711

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 426 NEDVRRRQKETNEMQPMKMQQMGNMPMPCSRCLHSQDRVSLLPIRVGLHHI 578
           N+  + ++     M+  KM ++GN  +  S   HS  RV ++P   G H+I
Sbjct: 525 NKTPQEKKDYIERMRKRKMAEVGNY-LATSFLAHSDKRVIMVPYHFGEHYI 574


>11_01_0349 -
           2614682-2614721,2614881-2614955,2615346-2615538,
           2615654-2616287
          Length = 313

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 542 HPVLAVEASRTWHWHVTHLLHFHWLH 465
           HP+ + E  ++W W V    +FH+ H
Sbjct: 5   HPLFSQEQPQSWPWGVAMYANFHYHH 30


>05_02_0047 +
           6006808-6007129,6009229-6009890,6009980-6010129,
           6010765-6010857,6011370-6011675
          Length = 510

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  AGIAYIYQINSPSALIDEGYL 118
           AG+A  Y  NSP AL+ EG L
Sbjct: 436 AGVASFYNANSPRALVVEGIL 456


>05_01_0511 +
           4256220-4256828,4256920-4257175,4257247-4257309,
           4257397-4257491
          Length = 340

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 623 VGPSVVRVAYLVYVCYVVEAYPDWEEAHPVLAVEASRTWHWHVTHLLHFHWLHFIGLFLS 444
           V P    +   V V    E +  WE    ++ V+ SR W W+V + L   W   I  F+ 
Sbjct: 56  VDPQTSDITINVIVSRATEGFY-WE----LMPVQNSRMWRWYVENALQHGWPLSIVPFVH 110

Query: 443 PSN 435
           P +
Sbjct: 111 PKD 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,585
Number of Sequences: 37544
Number of extensions: 258085
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)