Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30250
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 31   0.90 
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   6.3  
SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 581 CYVVEAYPDWEEAHPVLAVEASRTWHWHVTHLLHFH 474
           C + E Y +W   HP L   A  +W   +T++LHF+
Sbjct: 47  CDLPEDY-EWVVKHPTLTSSAEASWTALITYVLHFY 81


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 420  VLNEDVRRRQKETNEMQPMKMQQMGN 497
            V NE++R++Q++T E++   + +MGN
Sbjct: 1103 VFNENLRKQQEQTAELEKQLVLEMGN 1128


>SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 560 PDWEEAHPVLAVEASRTWHWH-VTHLLHFHWLHFIGL--FLSPS 438
           P W   H + A+E+   +H H +T ++   W H  G+   +SPS
Sbjct: 74  PSWYHRHGITAMESPSWYHRHGITVMVSPSWYHCHGITVMVSPS 117


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 402 FMRLKKVLNEDVRRRQKE 455
           F++LKKVL+ED  +RQ+E
Sbjct: 82  FLQLKKVLSEDEEKRQRE 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,697
Number of Sequences: 59808
Number of extensions: 303173
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)