Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30250
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    29   3.9  
At1g71040.1 68414.m08199 multi-copper oxidase type I family prot...    27   9.0  

>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 660 EGLRGRFTPDCIGRTICCPCCLFS 589
           EG + +F+ D I  T C PCC F+
Sbjct: 366 EGDKCKFSHDTIPETKCSPCCYFA 389


>At1g71040.1 68414.m08199 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 491 HLLHFHWLHFIGLFLSPSNIFIEDFFK 411
           H+   H  HF+  FL P ++ I  FFK
Sbjct: 51  HIPTLHGYHFVNGFLKPKSLHIGMFFK 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,145,160
Number of Sequences: 28952
Number of extensions: 208303
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)