Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   7.1  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 419 SILQKKTGAGRNI--YSQRQGSGHSCHVNVHQ-GVIRAIGWRLGLQAVTGVVFVTFILGT 589
           S L K+ GA R +  +    G+   C   V   G + A+ W LG+     +  V + L T
Sbjct: 117 SYLYKRFGAARILPFFMLSFGAMSLCQAAVKNFGGMMAVRWFLGMAESAVLPGVVYYLTT 176

Query: 590 FYRSASL 610
           FYR   L
Sbjct: 177 FYRRTEL 183


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 197 VLCQRGWHWPCLQ*QWPSASKVYTRY 274
           ++CQ  +H PCLQ +W ++S    RY
Sbjct: 225 IVCQHTFHCPCLQ-KWGNSSCPVCRY 249


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 520 SDRVATWLAGSHRSSIRYLYSGNILPFGFSVSSPATSNFTFE 645
           S +V       HR ++R  Y+ N L  G   + P +S  T+E
Sbjct: 165 SSQVTNQKPAPHRLTMRERYAANNLTNGLQFTLPLSSRKTYE 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,083
Number of Sequences: 5004
Number of extensions: 47349
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)