Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    31   1.0  
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    30   1.4  
07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062     30   1.8  
06_03_0995 + 26704029-26704107,26704543-26704595,26704907-267051...    29   2.4  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    29   3.2  
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187           29   4.2  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   4.2  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    28   5.5  
01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523...    28   5.5  
09_02_0357 + 7788946-7789326,7789620-7789997                           28   7.3  
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262...    28   7.3  
03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763     28   7.3  
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385...    27   9.7  

>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 257 STQRATVTGDKASATPADKAPRHPACIRTSGP 162
           ST   T +   ASATP  K PR P C   S P
Sbjct: 39  STLGRTRSSSSASATPNSKRPRRPPCTPESDP 70


>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 515 IRAIGWRLGLQAVTGVVFVTFILGTFYRSASLYHPQRRAILHLK 646
           +R +GW LGL A+T V  VTF    +  S  L H +     H++
Sbjct: 83  LRGMGWALGLVALTAVAAVTF-YAYYLMSRVLDHCEAHGRRHIR 125


>07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062
          Length = 583

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 173 TSGPNRLIASTARIADAWWRPCAKSCARVAAAVTPHP 63
           T+GP+++I   A  AD  WR   +S A +   ++ HP
Sbjct: 355 TNGPSKVITEGAAKADEHWRGNRRSIADLRYKISKHP 391


>06_03_0995 +
           26704029-26704107,26704543-26704595,26704907-26705122,
           26705328-26705411,26705498-26705572,26705711-26705794,
           26706179-26706268,26707463-26707558,26707655-26707726,
           26708500-26708604,26708804-26708845
          Length = 331

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 524 IGWRLGLQAVTGVVFVTFILGTFY 595
           +GW +G Q +   +F++FILGT Y
Sbjct: 201 LGWAVGSQPLFLALFISFILGTAY 224


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 105 GAWPPPGVGYSSGRSYKAVRPRSPNASR 188
           G+WPPP   YS   S  +  P SP  ++
Sbjct: 96  GSWPPPPAFYSYASSSSSYSPHSPTLAQ 123


>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
          Length = 297

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
 Frame = +2

Query: 365 GGRCGRGSHERLFDFNGSSILQ------KKTGAG---RNIYSQRQGSGHSC 490
           GG CGRG+  R  D   +S  +      ++TGAG   R   S+R+ SG SC
Sbjct: 51  GGGCGRGARGRAADSGVASTTERRRLRTRRTGAGGGRRTGASRRRPSGGSC 101


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 132 YSSGRSYKAVRPRSPNASRMSRCFVSGGGTGLVSSNSGPLRR 257
           Y+  R     R RSP ASR      +G G+ L  S  G  +R
Sbjct: 633 YTRNRRASRSRSRSPGASRRHERSATGSGSALPDSGHGERKR 674


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 90  SSATLGAWPPPGVGYSSGRSYKAVRPRSPNASR 188
           ++A   AWPPP   + SG   +   P S +A+R
Sbjct: 93  AAAAADAWPPPPGAHHSGSLQEFAAPASSSATR 125


>01_05_0735 -
           24749975-24750601,24751411-24751541,24752150-24752336,
           24753801-24753898,24754182-24754689
          Length = 516

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 515 IRAIGWRLGLQAVTGVVFVTFILGTFYRSASLYHPQRRAILHLK 646
           +R +GW LGL  +T V  VTF   +   S  L H + R   H++
Sbjct: 90  LRGMGWALGLTVLTAVGAVTFYEYSL-MSRVLEHCEARGRRHIR 132


>09_02_0357 + 7788946-7789326,7789620-7789997
          Length = 252

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 307 PRAATKPPTTAVTRVDFRRRGPLLLETRPVPPPLTKH 197
           PRA T PP +           P  L   PVPPP T H
Sbjct: 142 PRAHTTPPCSRSVAAPRASTSP--LRPSPVPPPATLH 176


>08_02_1137 +
           24623967-24623991,24625815-24625831,24626100-24626216,
           24626399-24626440,24627246-24629705
          Length = 886

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 99  TLGAWPPPGVGYSSGRSYKAVRPRSPNASRMSRCFVSGGGTGLVSSNSG 245
           TL AW  P +  SSG+     + RS +     RC   G G+  V   +G
Sbjct: 311 TLEAWIDPVIELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITG 359


>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
          Length = 249

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 87  HSSATLGA-W-PPPGVGYSSGRS 149
           HS+ T GA W PPP  GY  GRS
Sbjct: 210 HSAPTYGAGWAPPPAGGYYGGRS 232


>10_08_0614 -
           19238064-19238132,19238381-19238407,19238436-19238510,
           19238637-19239317,19239423-19239554,19239676-19239723,
           19239828-19239878,19240015-19240134,19241121-19241261,
           19241701-19241865,19241981-19242160,19242314-19242445,
           19242536-19242643,19242779-19242883,19243217-19243321,
           19243407-19243463,19243991-19244010,19244299-19244377,
           19245021-19245080,19245562-19245615,19246535-19246600,
           19246938-19246990,19247361-19247450,19248152-19248249,
           19248348-19248721
          Length = 1029

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +3

Query: 90  SSATLGAWPPPGVGYSSGRSYKAVR--PRS----PNASRMSRCFVSGGGTGLVSSNSGPL 251
           S  + G+  PP    SS  SY   R  PRS     + S  S  F  GGG+G  S ++ P 
Sbjct: 16  SPFSAGSRRPPTSSSSSAGSYLTGRLMPRSYSTASSVSSSSHFFGGGGGSGGGSRSTTPG 75

Query: 252 RRKST 266
           RR S+
Sbjct: 76  RRGSS 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,112
Number of Sequences: 37544
Number of extensions: 427617
Number of successful extensions: 1396
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)