Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8931| Best HMM Match : MFS_1 (HMM E-Value=0.012)                    38   0.007
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)                       37   0.012
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.086
SB_8629| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.11 
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.55 
SB_44458| Best HMM Match : Filament (HMM E-Value=1)                    31   0.61 
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.61 
SB_280| Best HMM Match : MFS_1 (HMM E-Value=0.005)                     31   0.80 
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 31   1.1  
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                 30   1.4  
SB_50175| Best HMM Match : fn3 (HMM E-Value=1.3e-12)                   29   3.2  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   5.7  
SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_31344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42)             27   9.9  

>SB_8931| Best HMM Match : MFS_1 (HMM E-Value=0.012)
          Length = 266

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 318 TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMS 497
           +SF      L+F+Y         L    S ++ A YFKRRR L   F+ +G   G+ +MS
Sbjct: 45  SSFVPNIVLLYFTYGFVNGLGGNLMYISSMMVPALYFKRRRMLATAFVSAGPGAGLFIMS 104

Query: 498 TFIK 509
             ++
Sbjct: 105 PIVE 108


>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
          Length = 839

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 29/107 (27%), Positives = 40/107 (37%)
 Frame = +3

Query: 261 STRVTXXXXXXXXXXXXXFTSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRR 440
           S RVT              TSF      +FFSY         L        VA+YF++RR
Sbjct: 473 SFRVTAVLGSLTCCISLVLTSFTKASLHIFFSYSVLYGLGSCLFYMSCVYAVAEYFEKRR 532

Query: 441 ELVEIFIVSGRXLGIAVMSTFIKVSSERSGGDLACRQSPE*YSLPLF 581
            L   F+ SG  +G+      ++V  +  G  +  R       L LF
Sbjct: 533 GLALGFLTSGISVGVLAQGPVLQVLLDAYGWRITFRIMAGVVGLALF 579



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +3

Query: 219 TGLVSSNSGPL-RRKSTRVTXXXXXXXXXXXXXFTSFATQFHQLFFSYXXXXXXXXXLTR 395
           T L S  +G L  R + RVT              TSF      +FFSY         L  
Sbjct: 53  TFLASPLAGLLIGRFNFRVTAVLGSLTCCISLVLTSFTKASLHIFFSYSVLYGLGSCLFY 112

Query: 396 DCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMSTFIKVSSERSG 530
                 VA+YF++RR L   F+ SG  +G+      ++V  +  G
Sbjct: 113 MSCVYAVAEYFEKRRGLALGFLTSGISVGVLAQGPVLQVLLDAYG 157


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 318  TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMS 497
            +SF      L+F+Y         L    + ++ A YFKRRR L    + +G   G+ +MS
Sbjct: 3494 SSFVPNIVLLYFTYGFVNGLGVNLMYISTMMVPALYFKRRRMLATAIVSAGPGAGLFIMS 3553

Query: 498  TFIK 509
              ++
Sbjct: 3554 PIVE 3557


>SB_8629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 318 TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMS 497
           +SF +    L+F+Y         L    S ++ A YFKRRR L    + +G    + +MS
Sbjct: 130 SSFVSNIVLLYFTYGFMNGIGSNLIYISSMMVPALYFKRRRMLATAIVSTGPGASLFIMS 189

Query: 498 TFIK 509
             ++
Sbjct: 190 PIVE 193


>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 318 TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGI 485
           +SFA   + L+F+Y         L    + + V   FKRRR +   F+ +G  L I
Sbjct: 167 SSFARSLNLLYFTYGICYGAGTSLIHSSNMMFVTASFKRRRAMATGFVAAGPSLFI 222


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.1 bits (62), Expect(2) = 0.55
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 319 VKRHPRAATKPPTTAVTRVDFRRRGPLLLETRPVPPP 209
           V ++P+  T PPTT  T        P  L   P PPP
Sbjct: 884 VTKNPKTTTAPPTTPTTPKPTTPAPPPPLPLAPEPPP 920



 Score = 21.0 bits (42), Expect(2) = 0.55
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 229 TRPVPPPLTKHL 194
           TRP PPP T  L
Sbjct: 947 TRPTPPPPTSAL 958


>SB_44458| Best HMM Match : Filament (HMM E-Value=1)
          Length = 748

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = -1

Query: 352 KNS**NCVANDVKRHPRAATKPPTTAVTRVDFRRRGPLLLETRPVPPPL 206
           KN+  N  A + K+  +AATK P  A    DF +  PL +   PVPPPL
Sbjct: 498 KNASKNADAKNAKKTKKAATKKP--AKKADDFEQ--PLKIPKVPVPPPL 542


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 396 DCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMSTFIKVSSERSGGDLACRQ 551
           DC    + + FK+  E+ E+FI   +  G   + T +   + ++G D+A R+
Sbjct: 62  DCDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHAEAAKAGLDMATRK 113


>SB_280| Best HMM Match : MFS_1 (HMM E-Value=0.005)
          Length = 480

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 506 QGVIRAIGWRLGLQAVTGVVFVTFILGTFY 595
           Q VI A+GWR  L+ ++G++ +  +L T Y
Sbjct: 38  QAVIDAVGWRDTLRVMSGIMLIICVLSTNY 67


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/86 (22%), Positives = 33/86 (38%)
 Frame = +3

Query: 252 RRKSTRVTXXXXXXXXXXXXXFTSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFK 431
           +R   RVT              ++FA   + L+F+Y         L    + + +  YF+
Sbjct: 100 QRFGCRVTAMLGGGICAVSLFLSAFAVDLYLLYFTYGVLLGLGNSLCYTSALIALTLYFR 159

Query: 432 RRRELVEIFIVSGRXLGIAVMSTFIK 509
           R   L       G  LGI +++  +K
Sbjct: 160 RHIALANSLGFLGPALGIVILTPLLK 185


>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 634 NCSSLGMIQRSRTVECSQNKGNEYYSGDCLQAKSPPD 524
           +C+S+ M Q +  V  +    N  Y+G  L A +PPD
Sbjct: 798 SCNSMNMDQPANAVNAADVATNANYAGPILSAAAPPD 834


>SB_50175| Best HMM Match : fn3 (HMM E-Value=1.3e-12)
          Length = 160

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 274 VTRVDFRRRGPLLLETRPVPPPLTK 200
           VTR D R    +L++ RPVPP LT+
Sbjct: 69  VTRADNRSSTSILVQWRPVPPGLTQ 93


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 274  VTRVDFRRRGPLLLETRPVPPPLTK 200
            VTR D R    +L++ RPVPP LT+
Sbjct: 2051 VTRADNRSSTSILVQWRPVPPGLTQ 2075


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 222 QCHPR*QST*TSCLHSDFWAEP 157
           QC P   S+ TS   +DFW EP
Sbjct: 285 QCSPSPHSSLTSIFRNDFWGEP 306


>SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 318 TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMS 497
           TSF     +++ +Y         L+   S +++ QYF++R  L      SG  +G  + +
Sbjct: 109 TSFVQNPGKMYVTYGLLWGVGSGLSFTPSIIVLGQYFRKRFPLANGIASSGSGIGGLLAA 168

Query: 498 TFIK 509
            FI+
Sbjct: 169 PFIQ 172


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +2

Query: 530 WRL-GLQAVTGVVFVTFILGTF 592
           W+L G Q++TG++F+T ++G +
Sbjct: 238 WQLIGFQSLTGILFITMLIGYY 259


>SB_31344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 316 KRHPRAATKPPTTAVTRVDFRRRGPLLLETRPV 218
           KRH     + P T + R+ F  R P +LET  V
Sbjct: 51  KRHNENQPEDPRTRLERLGFSARSPKVLETTTV 83


>SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 318 TSFATQFHQLFFSYXXXXXXXXXLTRDCSTLMVAQYFKRRRELVEIFIVSGRXLGIAV 491
           TSF  +  +++ +Y         L+   S +++ +YF++R  LV     SG  +G  V
Sbjct: 123 TSFVQEPPKMYLTYGLLFGVGSSLSFVSSIVILGEYFQKRLALVNGIATSGSGVGSLV 180


>SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42)
          Length = 307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = -3

Query: 227 KASATPADKAPRHPA--CIRTSGPNRLIASTARIADAWWRPCAKSCARVAAAVTPHP 63
           ++ AT  D    HPA  C R     R      R     W+   +SCA V   +  HP
Sbjct: 176 RSCATVYDHMEAHPAIMCDRVRSYGRKPCDHVRPCTIIWKHTLRSCATVYDHIEAHP 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,413
Number of Sequences: 59808
Number of extensions: 404542
Number of successful extensions: 975
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)