Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   4.9  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   4.9  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   4.9  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 396 DCSTLMVAQYFKRRRELVEIFIVSGRXLGIAVMSTFIKVS 515
           + + ++V  YF++RR L   F VSG  +G  +    + +S
Sbjct: 182 NAAIVIVTYYFEKRRGLATSFAVSGTGVGTVIYPILLNLS 221


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 281 HRRNACRLSTQRATVTGDKASATPADKAPRHPACIRT 171
           HR+N  + S +R   TG      P      HP C  T
Sbjct: 357 HRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLCRHT 393


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 281 HRRNACRLSTQRATVTGDKASATPADKAPRHPACIRT 171
           HR+N  + S +R   TG      P      HP C  T
Sbjct: 357 HRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLCRHT 393


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 281 HRRNACRLSTQRATVTGDKASATPADKAPRHPACIRT 171
           HR+N  + S +R   TG      P      HP C  T
Sbjct: 357 HRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLCRHT 393


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +1

Query: 487 LSCQRSSRCHQSDRVATWL-------AGSHRSSIRYLYSGNIL--PFGFSVSSPATSNFT 639
           + C   S  H+S R+  WL        G+H S I YL+  N L  P G S +    S  T
Sbjct: 396 VECYGYSFDHRSKRMWGWLQHVAPFTGGTHTSEITYLFDCNALSTPLGMSKTDKVVSGMT 455


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 GYSSGRSYKAVRPRSPNASRMSRCFVSGGGTGLVSSNSGP 248
           G+SS R+   +  RS  +S   R     GGT + S NSGP
Sbjct: 780 GWSS-RASSVMSQRSSRSSVGLRLSTFSGGTSIASDNSGP 818


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,835
Number of Sequences: 27780
Number of extensions: 297755
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)