Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 310 HPRAATKPPTTAVTRVDFRRRGPLLLETRPVPPPLTKHLD 191
           H RAA+K   +  +  D  R G   L   P  PPL  H +
Sbjct: 410 HSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 310 HPRAATKPPTTAVTRVDFRRRGPLLLETRPVPPPLTKHLD 191
           H RAA+K   +  +  D  R G   L   P  PPL  H +
Sbjct: 410 HSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTE 449


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 478 WA*LSCQRSSRCHQSDR-VATWLAGSHRSSIRYLYSGNILPFGF 606
           W  L  + S+R +   R + T        +I+Y  SG+ +PF F
Sbjct: 271 WRNLMDEHSNRTNSDPRMILTEAYTEFNLTIKYYKSGSTVPFNF 314


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 266 CRLS-TQRATVTGDKASATPADKAPRHPACI 177
           C L+ T +A +  D+  ATP     ++P C+
Sbjct: 14  CLLNETAKAIIGVDECQATPVIHFLQYPGCV 44


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 120 PGVGYSSGRSYKAVRPRSPNASRMSRC 200
           P   ++SGR Y A       +SR S C
Sbjct: 425 PSQRFASGRYYSAYSLHHVRSSRESSC 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,104
Number of Sequences: 438
Number of extensions: 3599
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)