Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30248
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family prot...    28   6.1  
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A...    28   6.1  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   6.1  
At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase...    27   8.1  
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    27   8.1  
At1g16860.1 68414.m02035 merozoite surface protein-related conta...    27   8.1  

>At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 369

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 320 CEETSQSCY*TTHHRRNACRLSTQRATVTGDKASATP 210
           CE+ S+  +   +H   A  L   +A + GD+  ATP
Sbjct: 324 CEDRSKFVFWDAYHPTEAANLIVAKALLDGDQTVATP 360


>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 500

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 174 PNASRMSRCFVSGGGTGLVSSNSGPLRRKSTRV 272
           P +S + R   SGGG+G V SNSG  +R S+ V
Sbjct: 28  PVSSPVQRSGTSGGGSGPVRSNSG--KRMSSAV 58


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 307 PRAATKPPTTAVTRVDFRRRGPLLLETRPVPPPLTK 200
           P  ATKPP+ A+ +       P  L T P+ PP TK
Sbjct: 41  PSPATKPPSPAL-KPPTPSYKPPTLPTTPIKPPTTK 75


>At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase (PGA3)
           GI:3152948 from [Arabidopsis thaliana]
          Length = 397

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 261 TFDAEGHCYWRQGQCH 214
           TFD EG+  WR   CH
Sbjct: 115 TFDGEGNAAWRVNNCH 130


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
           similar to protein transport protein Sec24A
           (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 90  SSATLGAWPPPGV-----GYSSGRSYKAVRPRSPNASRMSRCFVSGG 215
           +S+   + PPPG+     G  +G      RP +P+AS+ +R F + G
Sbjct: 16  ASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTPSASQPTRPFTASG 62


>At1g16860.1 68414.m02035 merozoite surface protein-related contains
           weak similarity to merozoite surface protein [Plasmodium
           falciparum] gi|12043655|gb|AAG47601
          Length = 474

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 114 PPPGVGYSSGRSYKAVR--PRSPNAS-RMSRCFVSGGGTGLVSSNSGPLRR 257
           P PG    SG      +  P +P A+ RMS    S G   +  +NSGPL +
Sbjct: 66  PIPGAPSRSGSFAGTAQSGPGAPMATGRMSGSLASAGSVSMKKTNSGPLSK 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,618
Number of Sequences: 28952
Number of extensions: 287866
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)