Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30245
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0694 - 6136025-6136749,6137425-6137971                           30   0.91 

>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 66  SRPGSAFTVGXVYGIXXPLNTGWDMGLIXSPLV*AXIFFIYLYISXAFXYI-SMH*LLLC 242
           +RP  A T+G  Y I   L TG+   L  +  + A  +F YLY       + S+  +L C
Sbjct: 30  ARPAPADTLGVAYAIFFTLGTGF--LLPWNAYITAVDYFSYLYPGAPVDRVFSVSYMLAC 87

Query: 243 IYTCCLVRVXWSLXSAPTFAN 305
                L+ + +   SAP   N
Sbjct: 88  FLPLVLIVLCFPKSSAPARIN 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,426
Number of Sequences: 37544
Number of extensions: 155434
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)