Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30245
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             25   2.6  

>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 24.6 bits (51), Expect(2) = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 221 HALITFVHLYLLLSASXMEFXQRSYVCK 304
           HAL +  +  L +SA  M F  R Y CK
Sbjct: 521 HALTSGKYARLRVSAKNMSFTCRRYFCK 548



 Score = 22.6 bits (46), Expect(2) = 2.6
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 374 YVCRXGRCSKSIRFNFYAIDNFIK 445
           Y C+  RCS++  + + A++  ++
Sbjct: 545 YFCKRIRCSRAYTYTYVAVERTLE 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,173
Number of Sequences: 59808
Number of extensions: 190833
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)