Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30245
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 183 IYLYISXAFXYISMH*LLLCIYTCCLVRV-XWSL 281
           IYL +   F  + M+ +L C Y C  +RV  W+L
Sbjct: 32  IYLIVYGIFHLLIMYFVLKCAYICLKIRVFHWNL 65


>Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical
           protein M05D6.9 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -1

Query: 372 ANVPRLRYRER*KT-----RAMDTVXSNLQT*ERXSNSXKLALSNKYRCTKVINACLCXQ 208
           + +PR RYR+R  T     R       +  + +  S S K ++    R  +V+N   C Q
Sbjct: 20  SRIPRARYRKRGPTGFSLARIQKEYDEDYDSTDDSSTSRKSSVDGSRRRDEVVNDAKCLQ 79

Query: 207 MXSRYINI 184
             +  +NI
Sbjct: 80  KCNNQLNI 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,203
Number of Sequences: 27780
Number of extensions: 139845
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)