Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30245
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.5  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 258 SNKYRCTKVINACLCXQMXSRYINI*K 178
           + K+ C+K  N CL  +   R +NI K
Sbjct: 95  AEKFECSKTSNPCLPHRNSDRDLNIRK 121


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 359 VYAIENVKKLALWTQXXQICKRRSAXQTPXNS 264
           +Y  +NV +  LW     +   R+A  TP NS
Sbjct: 71  MYKDKNVVQKFLWWYKQGMFLSRNAIFTPLNS 102


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 359 VYAIENVKKLALWTQXXQICKRRSAXQTPXNS 264
           +Y  +NV +  LW     +   R+A  TP NS
Sbjct: 71  MYKDKNVVQKFLWWYKQGMFLSRNAIFTPLNS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,777
Number of Sequences: 438
Number of extensions: 1786
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)