Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30243
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.45 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.8  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 180 LLSNRFGEDEEA 215
           +LSNRFGE+EEA
Sbjct: 138 ILSNRFGENEEA 149


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 8   GSCKQLVHSPSRPSSAKQDGNIKHHTFRFY 97
           G C  LV +P R       GN+  ++ +++
Sbjct: 284 GGCHILVATPGRLKDFVNRGNVSFNSLKYF 313


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 36  PVGLHQLNKMATLNTILFVFMILGAFVKAQ 125
           P+G+  +++    N +LF+F+++ + V  Q
Sbjct: 148 PLGILLISQDVIANVLLFIFIVVKSGVAFQ 177


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 186 SNRFGEDEEAPIEVRGDGNLINR*ILYQSRTNPSGT 293
           +NRFG    A + +  +G+L+    +   +T P  T
Sbjct: 415 TNRFGTSGLAWLYLNNEGSLVYNVQIENLKTTPDNT 450


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 118 KPKDRFTLASVP*GIQPWRLICYRT 192
           KP+ R TL     GIQP+  + + T
Sbjct: 453 KPRQRGTLEGNNMGIQPYDSLLWHT 477


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -1

Query: 429 CCNRLMIFNACVFFFCLY*FLSIKLFGLC 343
           CC  ++     +F  C+Y F    +  LC
Sbjct: 269 CCAFIIFTMHLLFLLCIYYFYCALIILLC 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,192
Number of Sequences: 336
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)