Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30243
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    27   2.0  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   2.6  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   3.5  

>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 548 VFYGSMMLSNNIDSTKRMRSSLPFRKKIIEIRTSSTVEEF 429
           +FYG + LSN +DS K +    PF+K+   +      E+F
Sbjct: 92  LFYGEIDLSN-LDSVKSLPHPWPFQKESRPVEKDEEQEKF 130


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 184 YRTDSGKTRKLLSKSEATAI*LTDKFF--TNREPTLLVPELESL*GSKKKTPNLPAKTEQ 357
           ++  S  TR L  +S    + L  K F  + R P ++ P        K  TPNL  K  +
Sbjct: 436 HKAKSRSTRGLRIRSYEAGVLLYPKLFEESQRAPCIMTPTY------KTNTPNLDEKRRE 489

Query: 358 FYR*KLI 378
           FY  ++I
Sbjct: 490 FYGKRVI 496


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 159 TLWD*GQRKTVFGLLQTLPES*KRKVWCLMLPSCLADEGRLGECTNCLHD 10
           T+WD G +KT+    +   ES +  +W  ++ S   D+ RL EC N L +
Sbjct: 63  TIWDIGGQKTLRNFWKNYFESTEAIIW--VVDS--LDDLRLEECRNTLQE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,774
Number of Sequences: 5004
Number of extensions: 54509
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)