Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30243
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255...    33   0.22 
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   8.3  
01_05_0271 + 20276965-20278674                                         28   8.3  

>02_05_0582 +
           30124280-30124487,30124600-30124698,30125438-30125589,
           30125708-30125896,30126001-30126111,30126370-30126536,
           30127923-30128184
          Length = 395

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 3   NTGRVNN*CIHPVGLHQLNKMATLNTILFV-FMILGAFVKAQRPFYAGLSPIGYP-AVET 176
           +TG  NN  +  VG +Q+ K+A   TI+   FMI    V +Q+     +   G   A  T
Sbjct: 211 STGLANNFPLFSVGFYQMAKIAVTPTIVVAEFMIFQKRVSSQKVITLAIVSFGVAVATVT 270

Query: 177 DLLSNRFG 200
           DL  N FG
Sbjct: 271 DLEFNFFG 278


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 316 SKKKTPNLPAKTEQFYR*KLIKAKKKNTSIENHETVATNSSTVLDVRI 459
           S ++TP  P K E+ Y  + + AK  ++   N++T   N    L V +
Sbjct: 96  SSEETPATPCKNEEIYH-EQVNAKASHSEHGNNDTPQLNPHDYLTVHV 142


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 144 GQRKTVFGLLQTLPES*KRKVWCLMLPSC 58
           GQ K  +GL+QT+P      VW  +L  C
Sbjct: 472 GQLKEAYGLIQTMPAPADSGVWGALLWGC 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,504
Number of Sequences: 37544
Number of extensions: 318910
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)