Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30243
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 150 PIGYPAVETDLLSNRFGEDEEAPIEVR 230
           P  Y +V T +  NRFG+D E+ + V+
Sbjct: 38  PDRYRSVATQVF-NRFGDDTESKLPVK 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 346 KTEQFYR*KLIKAKKKNTSIENHETVATNSSTVLDV 453
           +TE+ YR  L++ KK+    + H  + T    + D+
Sbjct: 142 QTEEMYREMLLEHKKRRARRDIHPELNTQGIALADL 177


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 238 PSPRTSIGASSSSPNLFDSKSVSTAGYP 155
           P+PR +   SSS+ +   +K  + AG P
Sbjct: 513 PNPRIASAPSSSTSSSPPAKGAAAAGQP 540


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 379 KAKKKNTSIENHETVATNSST 441
           K K+K+++IEN     +N+S+
Sbjct: 215 KRKRKSSTIENESETESNASS 235


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 546 DNMADMNGTENLISRIVLVGIN 611
           DN+  +N TEN +  I  +G+N
Sbjct: 171 DNLQTLNLTENRLRDINDIGLN 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,211
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)