Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30243
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29100.1 68417.m04165 ethylene-responsive family protein cont...    29   4.0  
At3g54750.2 68416.m06058 expressed protein                             29   4.0  
At3g54750.1 68416.m06057 expressed protein                             29   4.0  
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    28   5.2  

>At4g29100.1 68417.m04165 ethylene-responsive family protein
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 407

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -3

Query: 241 LPSPRTSIGASSSSPNLFDSKSVST 167
           LPSP TS  +SSSSP+L ++ ++S+
Sbjct: 67  LPSPATSSSSSSSSPSLPNNPNLSS 91


>At3g54750.2 68416.m06058 expressed protein 
          Length = 589

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 625 QYGTAFMPTNTIRLIKFSVPFMSAMLSSMVQ*CCQII*TRQS 500
           +Y   F+PT  + ++   VPF +A LSS    C +++ T  +
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVKTEHT 483


>At3g54750.1 68416.m06057 expressed protein 
          Length = 589

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 625 QYGTAFMPTNTIRLIKFSVPFMSAMLSSMVQ*CCQII*TRQS 500
           +Y   F+PT  + ++   VPF +A LSS    C +++ T  +
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVKTEHT 483


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 388 KKNTSIENHETVATNSSTVLDVRISIIFFRNGKLD-LIRFV 507
           K NTS+ N  +  T +  ++ + +SIIFF +G L  L++F+
Sbjct: 27  KSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 284 FWYLNWKAYEALRKRPQTFQQRPNNFI 364
           FW+L W  ++ +RKR +      N F+
Sbjct: 242 FWFLRWFDFQGVRKRCRALVSEVNTFV 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,275
Number of Sequences: 28952
Number of extensions: 275499
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)