Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30242
         (526 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000519C70 Cluster: PREDICTED: hypothetical protein;...    38   0.11 
UniRef50_Q6IHY5 Cluster: HDC00331; n=3; Diptera|Rep: HDC00331 - ...    37   0.33 
UniRef50_A6PN09 Cluster: Putative uncharacterized protein precur...    34   2.3  
UniRef50_A6L2D5 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_A2E941 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_O30279 Cluster: Uncharacterized protein AF_2392; n=1; A...    33   5.3  
UniRef50_Q933S4 Cluster: CjrC; n=10; Enterobacteriaceae|Rep: Cjr...    32   7.0  
UniRef50_A0QGR2 Cluster: Ppe family protein; n=2; Mycobacterium ...    32   7.0  
UniRef50_Q8NPY1 Cluster: Hypothetical membrane protein; n=1; Cor...    32   9.3  
UniRef50_A0QIH8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.3  
UniRef50_P24310 Cluster: Cytochrome c oxidase polypeptide VIIa-h...    32   9.3  

>UniRef50_UPI0000519C70 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 118

 Score = 38.3 bits (85), Expect = 0.11
 Identities = 16/41 (39%), Positives = 29/41 (70%)
 Frame = +2

Query: 65  YHQLGRITGRLIAASNLQAPLFPVAPIALQRVEVPVIQYNT 187
           +HQ    TGRL  ++ LQA L+P++P AL+++E P + +++
Sbjct: 3   FHQFNAFTGRLKQSTQLQA-LYPLSPKALEKIETPRMMFDS 42


>UniRef50_Q6IHY5 Cluster: HDC00331; n=3; Diptera|Rep: HDC00331 -
           Drosophila melanogaster (Fruit fly)
          Length = 62

 Score = 36.7 bits (81), Expect = 0.33
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 274 VPENIRRXQELFQRDNXLXVFLKGGPADVIXXXXXXXXXXXXXVGVVQTIYS 429
           +P+ +    ++FQ  N L VFLKGGPAD I             V  V  +Y+
Sbjct: 3   LPDGLSNKMKVFQAVNELPVFLKGGPADKILFGITAGLCGLGIVSFVHLVYT 54


>UniRef50_A6PN09 Cluster: Putative uncharacterized protein
           precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           Putative uncharacterized protein precursor - Victivallis
           vadensis ATCC BAA-548
          Length = 742

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 205 DRRSLCRTWKKESDAWENTPYPPVPENIRRXQELF 309
           D  +LCR WKK    +EN P PP      R  E+F
Sbjct: 220 DLTALCRAWKKNHLTFENAPVPPPTLRSGREGEVF 254


>UniRef50_A6L2D5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides vulgatus ATCC 8482|Rep: Putative
           uncharacterized protein - Bacteroides vulgatus (strain
           ATCC 8482 / DSM 1447 / NCTC 11154)
          Length = 932

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -2

Query: 279 GNWWIRSVLPGIRFLFPGAAQASSVTVENWLVLYWITGTSTRCRAMGATGNSGACRFE 106
           GNWWI +   GI+          S  + N    +WI  T TR +A G  G +GA  +E
Sbjct: 309 GNWWIGTTDTGIKAQGEKGDDGVSPHIGN-NGNWWIGTTDTRIKAQGEKGVNGASAYE 365


>UniRef50_A2E941 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 382

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -2

Query: 276 NWWIRSVLPGIRFL-----FPGAAQASSVTVENWLVLYWITGTSTRCRAMGATGNSGACR 112
           N  +++ LP I  L     FPG  +  SV + NW    W TG +  C+A  +  +   C+
Sbjct: 68  NLMLQTYLPHINILATTISFPGPIEGDSVEIPNW----WSTGDNKFCKAEFSEFSFSKCQ 123

Query: 111 FE 106
           FE
Sbjct: 124 FE 125


>UniRef50_O30279 Cluster: Uncharacterized protein AF_2392; n=1;
           Archaeoglobus fulgidus|Rep: Uncharacterized protein
           AF_2392 - Archaeoglobus fulgidus
          Length = 86

 Score = 32.7 bits (71), Expect = 5.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 220 CRTWKKESDAWENTPYPPVPENIRRXQEL 306
           CR W      W+  PYPP P  +R   EL
Sbjct: 28  CRWWGYRDHPWDYPPYPPYPPALRPEDEL 56


>UniRef50_Q933S4 Cluster: CjrC; n=10; Enterobacteriaceae|Rep: CjrC -
           Escherichia coli
          Length = 753

 Score = 32.3 bits (70), Expect = 7.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 513 YFKCYHSKPSTNIIMLHINDLLXXGNSMGVDGLHYTYQSESAEKQSQTIQY-NVSRST 343
           Y+  YH  P + +I  ++      GN    DG  YT+   SA+ +S  +   N SR T
Sbjct: 293 YYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSAQNRSDALDINNTSRFT 350


>UniRef50_A0QGR2 Cluster: Ppe family protein; n=2; Mycobacterium
           avium|Rep: Ppe family protein - Mycobacterium avium
           (strain 104)
          Length = 376

 Score = 32.3 bits (70), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 183 LYWITGTSTRCRAMGATGNSGACRFEAAMSLPV 85
           L W+T T+TR     A  NS A  +EAA ++ V
Sbjct: 74  LTWLTDTATRAEEAAAQANSAATAYEAAFAMTV 106


>UniRef50_Q8NPY1 Cluster: Hypothetical membrane protein; n=1;
           Corynebacterium glutamicum|Rep: Hypothetical membrane
           protein - Corynebacterium glutamicum (Brevibacterium
           flavum)
          Length = 860

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 279 GNWWIRSVLPGIRFL-FPGAAQASSVTVENWLVLYW-ITGTSTRCRAMGATGNSGA 118
           GNWWI  V  G+      GA  A        +  YW I G +T  +A+G  G +GA
Sbjct: 496 GNWWIGIVDTGVPARGQDGANGADGANTVEIINGYWYINGENTGVKAVGENGTNGA 551


>UniRef50_A0QIH8 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium avium 104|Rep: Putative uncharacterized
           protein - Mycobacterium avium (strain 104)
          Length = 102

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 115 TGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESDAWENTPYPPVP 279
           T  T PC+  SP T    C  + ++ +L C+   + +       +W+N P PP P
Sbjct: 38  TPGTPPCAGPSPLTPEQQCALIAWRSMLPCNWLGM-QVPAGTPGSWDNPPAPPPP 91


>UniRef50_P24310 Cluster: Cytochrome c oxidase polypeptide
           VIIa-heart, mitochondrial precursor; n=24;
           Euteleostomi|Rep: Cytochrome c oxidase polypeptide
           VIIa-heart, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 79

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 286 IRRXQELFQRDNXLXVFLKGGPADVI 363
           +R  Q+LFQ DN + ++LKGG  D I
Sbjct: 26  VREKQKLFQEDNDIPLYLKGGIVDNI 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,931,312
Number of Sequences: 1657284
Number of extensions: 10219918
Number of successful extensions: 25600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25594
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)