Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30242
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   3.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   4.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   9.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   9.1  

>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 229 WKKESDAWENTPYPPVPEN 285
           WKK   A E+TPY P+  N
Sbjct: 770 WKKSPGASEDTPYDPIGFN 788


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 49  IVQQNVSSTRPNYW*THCSFKSTGSTIPCSTHSPTTGGGSCNP 177
           IV  N S+ RP     H   +STGS    S+ S  + GGS NP
Sbjct: 241 IVTHNTSNFRPEGG-GHRHRRSTGSLSVGSSGSGFSSGGSGNP 282


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 181 QYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIRRXQE 303
           Q Q +LD   R+   T KKE D W       +  NI   +E
Sbjct: 371 QKQSLLDKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKE 411


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 71  QLGRITGRLIAASNLQAPLFPVAPIALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMP 250
           Q   +   L+  +NL+ P  P + +  ++ ++      TN    V+   C    KR L+P
Sbjct: 207 QFEALVQELVTTANLRLPYIPASFVDDEK-DLDFAIETTNLDIVVS---CFLE-KRVLIP 261

Query: 251 GRTLLIHQFPKI 286
            RT+ I  FPK+
Sbjct: 262 SRTMPISFFPKL 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,092
Number of Sequences: 5004
Number of extensions: 42010
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)