BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS30242 (526 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.0 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 4.0 SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.1 SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 9.1 >SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 797 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 229 WKKESDAWENTPYPPVPEN 285 WKK A E+TPY P+ N Sbjct: 770 WKKSPGASEDTPYDPIGFN 788 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 25.8 bits (54), Expect = 4.0 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 49 IVQQNVSSTRPNYW*THCSFKSTGSTIPCSTHSPTTGGGSCNP 177 IV N S+ RP H +STGS S+ S + GGS NP Sbjct: 241 IVTHNTSNFRPEGG-GHRHRRSTGSLSVGSSGSGFSSGGSGNP 282 >SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1194 Score = 24.6 bits (51), Expect = 9.1 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 181 QYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIRRXQE 303 Q Q +LD R+ T KKE D W + NI +E Sbjct: 371 QKQSLLDKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKE 411 >SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 24.6 bits (51), Expect = 9.1 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = +2 Query: 71 QLGRITGRLIAASNLQAPLFPVAPIALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMP 250 Q + L+ +NL+ P P + + ++ ++ TN V+ C KR L+P Sbjct: 207 QFEALVQELVTTANLRLPYIPASFVDDEK-DLDFAIETTNLDIVVS---CFLE-KRVLIP 261 Query: 251 GRTLLIHQFPKI 286 RT+ I FPK+ Sbjct: 262 SRTMPISFFPKL 273 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,147,092 Number of Sequences: 5004 Number of extensions: 42010 Number of successful extensions: 103 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 214353836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -