Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30242
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286...    29   1.7  
11_04_0432 + 17693438-17693612,17693782-17694125,17695210-17695524     27   7.0  
03_05_0244 - 22295105-22295389                                         27   7.0  
01_06_1518 + 37925609-37925871,37925954-37926554                       27   7.0  
05_04_0399 - 20955319-20955838,20955939-20956201                       27   9.2  
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754...    27   9.2  
03_05_0955 + 29168771-29170507                                         27   9.2  
02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818     27   9.2  

>07_01_0383 -
           2856777-2858042,2858238-2858270,2858607-2858742,
           2860778-2860890
          Length = 515

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 211 RSLCRTWKKESDAWENTPYPPVPENIRRXQELFQRDNXLXVFLKG 345
           R   + +  E+D+W++   PP+PE I +   +   +N + V  +G
Sbjct: 422 RMKVKVYDPETDSWDSVKGPPMPERIMKPFSVSCLENKIVVVGRG 466


>11_04_0432 + 17693438-17693612,17693782-17694125,17695210-17695524
          Length = 277

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 61  NVSSTRPNYW*THCSFKSTGST-IPCSTHSPTTGGGSCNP 177
           N SS +   W     F+  G+T IPC    P TG GS  P
Sbjct: 125 NSSSAKRTEWVMQ-EFRLAGATLIPCPVTRPATGDGSMLP 163


>03_05_0244 - 22295105-22295389
          Length = 94

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 STGSTIPCSTHSPTTGGGSCNPVQYQPVL 198
           S+ ST+P S  SP  GGG C+      +L
Sbjct: 8   SSSSTLPSSPLSPGGGGGGCSVAYSSAIL 36


>01_06_1518 + 37925609-37925871,37925954-37926554
          Length = 287

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 82  NYW*THCSFKSTGSTIPCSTHSPTTGGGS 168
           NYW TH   K     I   TH P + G S
Sbjct: 106 NYWNTHIKRKLLSRGIDPQTHRPVSAGSS 134


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 82  NYW*THCSFKSTGSTIPCSTHSPTTGGG 165
           NYW TH   K     I   TH P   GG
Sbjct: 106 NYWNTHIKRKLLARGIDPQTHRPLLSGG 133


>04_04_0499 +
           25674024-25674233,25674515-25675072,25675320-25675415,
           25675509-25675601,25675882-25676125,25676239-25676276,
           25676377-25676478
          Length = 446

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 300 RALPERQXLXRLPKRWTC*RYTVSSDFASLRSRIGRCSANHL 425
           R L E Q   R   RW   R ++ ++ A+LR R+G   A  L
Sbjct: 131 RWLREEQRWLREESRWRAERESLLAEIAALRLRLGTVEAGPL 172


>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 112 STGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDR 210
           +  + + CS+ SP++   SC+    Q +L C R
Sbjct: 184 AAATPVACSSPSPSSADASCSAPILQSLLSCSR 216


>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
          Length = 530

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 258 VLPGIRFLFPGAAQASSVTVENWLVLYWITGTSTRCRAMGATGNSGAC 115
           +L G R     AA + +     WL+L W++  +     +G+  N   C
Sbjct: 443 LLLGARVAASAAAISPAAETNAWLILAWVSTVAGNLSLLGSAANLIVC 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,883
Number of Sequences: 37544
Number of extensions: 291402
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)