Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30242
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    31   0.38 
AC199169-6|ABO33256.1|  502|Caenorhabditis elegans Hypothetical ...    30   0.88 
U56964-2|AAB54031.1|  345|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effe...    27   6.2  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 133 CSTHSPTTGGGSCNPVQYQPVLDCDRRSLC-RTWKKESDAWENTPY 267
           CST +P T    C  V  Q +    R+S+C     +  D   NTPY
Sbjct: 393 CSTANPCTDPFVCTEVASQSMCCASRKSICSEAGARSKDPLRNTPY 438


>AC199169-6|ABO33256.1|  502|Caenorhabditis elegans Hypothetical
           protein F38A1.5 protein.
          Length = 502

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +1

Query: 100 CSFKSTGS-TIPCSTHSPTTGGGSCNPVQYQPVL-----DCDRRSLCRTW 231
           CS+  T S  I  +T  PTT G SC PV    +L     D D +++  +W
Sbjct: 178 CSYNPTFSPAIISTTQEPTTEGNSCQPVDRMTLLFAYSNDLDPQAVNNSW 227


>U56964-2|AAB54031.1|  345|Caenorhabditis elegans Hypothetical
           protein F52E4.5 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 TWKKESDAWENTPYPPVPENIRRXQELFQRDNXL 327
           T+ KES+ WE   +P +       + LF RDN L
Sbjct: 56  TFDKESNKWERHDFPELVSEENSEEVLFVRDNQL 89


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 124 TIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESD 246
           T PC T+ P   GG+C  V+     DC      R  ++E +
Sbjct: 382 TSPCQTN-PCKNGGTCIAVENSAYCDCPEHFFGRACEEEEE 421


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 124 TIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESD 246
           T PC T+ P   GG+C  V+     DC      R  ++E +
Sbjct: 382 TSPCQTN-PCKNGGTCIAVENSAYCDCPEHFFGRACEEEEE 421


>Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical
           protein C15H11.5 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 212 LRSQSRTGWYCTGLQEPPPVVGLWVLQGIVEPVDL 108
           +R +  +GWY        P V L V+ G++ P ++
Sbjct: 303 MRQEPGSGWYILSAMYSLPNVPLMVMTGVIRPAEV 337


>AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical
           protein Y2H9A.1 protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 404 TNPRAQRSKVRRYSITSAGPPFR 336
           + PRAQ+SK RR  + S  PP +
Sbjct: 811 STPRAQKSKSRRDDVESEAPPVK 833


>AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effect
           sterile 4 protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 404 TNPRAQRSKVRRYSITSAGPPFR 336
           + PRAQ+SK RR  + S  PP +
Sbjct: 811 STPRAQKSKSRRDDVESEAPPVK 833


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = +1

Query: 124 TIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIRRXQE 303
           T P    +PT   G C  + +  VL C       T  + S    N  + P    +     
Sbjct: 548 TNPPRRDNPTNVIGECPMIAFPSVLKCSGNVSAETLNQLSVKLTNCAFSPTNIPLYSDNH 607

Query: 304 LFQR--DNXLXVFLKGGPA 354
            FQ   DN + V  KG  A
Sbjct: 608 CFQNYCDNSVIVSRKGNDA 626


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = +1

Query: 124 TIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIRRXQE 303
           T P    +PT   G C  + +  VL C       T  + S    N  + P    +     
Sbjct: 553 TNPPRRDNPTNVIGECPMIAFPSVLKCSGNVSAETLNQLSVKLTNCAFSPTNIPLYSDNH 612

Query: 304 LFQR--DNXLXVFLKGGPA 354
            FQ   DN + V  KG  A
Sbjct: 613 CFQNYCDNSVIVSRKGNDA 631


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 174 ITGTSTRCRAMGATGNSGACRFEAAMS-LPVIRPSXXXXXXXXXXXYWGS 28
           + G   RC +   +GNSG     +A++ L VI PS            WGS
Sbjct: 185 VFGFLGRCESSSCSGNSGISDLVSALTMLNVILPSFGGDSKSVTLAGWGS 234


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 174 ITGTSTRCRAMGATGNSGACRFEAAMS-LPVIRPSXXXXXXXXXXXYWGS 28
           + G   RC +   +GNSG     +A++ L VI PS            WGS
Sbjct: 185 VFGFLGRCESSSCSGNSGISDLVSALTMLNVILPSFGGDSKSVTLAGWGS 234


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 97  HCSFKSTGSTIPCSTHSPTTGGGSCNPVQYQPV 195
           H   K  GST PCS  SP +  G    V+ + V
Sbjct: 152 HSPQKPQGSTTPCSVQSPASPVGDEQAVKMEEV 184


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 97  HCSFKSTGSTIPCSTHSPTTGGGSCNPVQYQPV 195
           H   K  GST PCS  SP +  G    V+ + V
Sbjct: 152 HSPQKPQGSTTPCSVQSPASPVGDEQAVKMEEV 184


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +1

Query: 112  STGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIR 291
            S  +TI  S  +P+T   S   +   P          RT   + DA   TPY  V EN+ 
Sbjct: 926  SDSTTIDSSNSTPSTSDSS--GLSQTPSDSSSASDSMRTTTVDPDASTETPYDFVLENLT 983

Query: 292  RXQELFQRDNXLXV 333
              + ++  +N   +
Sbjct: 984  WNETVYYSENPFYI 997


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +1

Query: 112  STGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTWKKESDAWENTPYPPVPENIR 291
            S  +TI  S  +P+T   S   +   P          RT   + DA   TPY  V EN+ 
Sbjct: 926  SDSTTIDSSNSTPSTSDSS--GLSQTPSDSSSASDSMRTTTVDPDASTETPYDFVLENLT 983

Query: 292  RXQELFQRDNXLXV 333
              + ++  +N   +
Sbjct: 984  WNETVYYSENPFYI 997


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 174 ITGTSTRCRAMGATGNSGACRFEAAMS-LPVIRPSXXXXXXXXXXXYWGS 28
           + G   RC +   +GNSG     +A++ L VI PS            WGS
Sbjct: 185 VFGFLGRCESSSCSGNSGISDLVSALTMLNVILPSFGGDSKSVTLAGWGS 234


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 174 ITGTSTRCRAMGATGNSGACRFEAAMS-LPVIRPSXXXXXXXXXXXYWGS 28
           + G   RC +   +GNSG     +A++ L VI PS            WGS
Sbjct: 185 VFGFLGRCESSSCSGNSGISDLVSALTMLNVILPSFGGDSKSVTLAGWGS 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,048,741
Number of Sequences: 27780
Number of extensions: 245022
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)