Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30242
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58760.1 68418.m07360 transducin family protein / WD-40 repea...    30   1.1  
At5g48090.1 68418.m05941 expressed protein ; expression supporte...    29   1.4  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    29   1.9  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.3  
At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.8  
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP...    27   5.8  
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    27   5.8  

>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           damage-specific DNA binding protein 2 (GI:10798819)
           [Homo sapiens]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 97  HCSFKSTGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTW 231
           H +  STG  I          G  CNPVQ + +L C      R W
Sbjct: 296 HRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIW 340


>At5g48090.1 68418.m05941 expressed protein ; expression supported
           by MPSS
          Length = 636

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 273 WWIRSVLPGIRFLFPGAAQASSVTVENW 190
           W  R++L G+ F  PG+   +  T+E W
Sbjct: 545 WEDRNLLAGMSFYLPGSVDVNDKTIEQW 572


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152 QRVEVPVIQYNTNQFSTVT-EEACAAPGKRNLMPGRTLLIHQFPK 283
           + VE P++ YN N   TVT  E  A  G +NL+   +  ++ +PK
Sbjct: 93  ESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPK 137


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152 QRVEVPVIQYNTNQFSTVT-EEACAAPGKRNLMPGRTLLIHQFPK 283
           + VE P++ YN N   T+T  E  A  G +NL+   +  ++  PK
Sbjct: 94  ESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPK 138


>At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 464

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 SNLQAPLFPVAPIALQRVEVP 169
           S LQ PLFP+ P    R ++P
Sbjct: 226 SKLQVPLFPIGPFHKHRTDLP 246


>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
          Length = 348

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152 QRVEVPVIQYNTNQFSTVT-EEACAAPGKRNLMPGRTLLIHQFPK 283
           + V  P++ YN N  +T+T  E  AA G + L+   +  ++ +PK
Sbjct: 93  ESVAKPLLYYNNNLIATITLLEVMAAHGCKKLVFSSSATVYGWPK 137


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 210 SVTVENWLVLYWITGTSTRCRAMGATGNSGACRFEAAMSLP 88
           +V ++ W    W+   ST+C      G   +CRF    + P
Sbjct: 270 NVAIQEWKT--WLKVPSTKCDTYATCGQFASCRFNPGSTPP 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,504
Number of Sequences: 28952
Number of extensions: 225359
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)