Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30240
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.2  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    27   1.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   2.2  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.8  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   6.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.8  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 75   AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 209
            ++P +    PN+    P+    P A   F + L+  F+  GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 319 SCVELPLLTRRAWLHNTRPHTQPDHTKTESNSPYLCGV 432
           SC + P+  RR WL + +P  QP+    + N+ ++ G+
Sbjct: 172 SCFQDPIRVRRDWLDSIKP-GQPETLWFDQNTQHVIGL 208


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 66  GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 194
           G+ A+ F     PN +  ++K  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 395 PKLNRILLISVAFLCILVSFFTTWI 469
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 334 PLLTRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 453
           P  T +   +NT P + QP+ TK  +NSP     P+Y +V+
Sbjct: 145 PGSTNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -2

Query: 252  HRSLNPRSVARLSHRK*YLQ*P-KSKRVTPVKRLSWQTELEAMLV---S*FLCLEFPK 91
            ++ + PR +A L  R+  ++   K    TP +RL W  + +A+ +   S + CL + K
Sbjct: 887  NQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTK 944


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 412 SPYLCGVPMYFSVILYHLDI 471
           +P  CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,804
Number of Sequences: 5004
Number of extensions: 56706
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)