Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30240
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                         71   1e-12
11_01_0359 - 2731522-2732346                                           29   3.0  
01_07_0235 + 42198662-42199615,42200129-42200746                       28   5.2  
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848...    28   6.8  
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    27   9.0  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = +3

Query: 69  LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 248
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 249 D 251
           D
Sbjct: 92  D 92



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +2

Query: 257 GHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAFL 436
           G  RPV F+P RVNGQYI+EGL+            I+LD   +   P+  R+        
Sbjct: 96  GAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGGSGVA 155

Query: 437 CILVSFFTTWIFMRMKLPGYL 499
            I++++    +F+R+K+PGYL
Sbjct: 156 AIVIAYAMAMLFLRIKIPGYL 176


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 380 HNPTTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 496
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 489 GNFIRINIQVVKNDTKIHRNATEIRRIRFSFGVV 388
           G  + +NI  +  D KI +NA E R  RF   +V
Sbjct: 412 GAMVLVNISAIGRDEKIWKNANEFRPERFKDDMV 445


>03_05_0939 -
           28983091-28983747,28983805-28983913,28984245-28984801,
           28985197-28985414,28985508-28985613,28986352-28986429
          Length = 574

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 428 AFLCILVSFFTTWIFMRMKLPGYLQN*L*ANFVLFYFWAVVPISF 562
           AF+  LV++FTT    R   PG++ + L    + ++FW +  +SF
Sbjct: 515 AFILTLVAYFTT----RGGNPGWIPDNLNQGHLDYFFWLLAGLSF 555


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 124 GFLIFMFGISKTVNGIANSPSISLLLVQ 41
           GFL    G+ + +  +AN PS+ L  VQ
Sbjct: 23  GFLCVKDGVDEMIKYVANEPSVGLYFVQ 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,492
Number of Sequences: 37544
Number of extensions: 353782
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)