Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30240
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 30   1.7  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_28302| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_42984| Best HMM Match : DUF1651 (HMM E-Value=7.2)                   28   5.3  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = -2

Query: 501 CKYPGNFIRINIQVVKNDTKIHRNATEIRRIRFSFGVVGLCVRSSIMKPSPPSEKRKLDA 322
           C Y G+FI +  + VKNDT  H    +  R R S  +      S +M P+PP E +KL+A
Sbjct: 20  CTY-GSFILMKTRQVKNDTSTHTKPIKSSRNRLSLDMPTELDLSRMMNPTPPIENKKLEA 78

Query: 321 RPSMMY*PLT 292
           RPSMMY PLT
Sbjct: 79  RPSMMYCPLT 88


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 367 TRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIYAYEVARIFTEL 507
           T P T+ D  ++  ++P  CG+ +    +L+ + I+ Y +  +FT L
Sbjct: 370 TDPGTRNDTEESPKSTPRKCGLALLSVTLLFTVFIHFYALQTLFTRL 416


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 273 TGLLCPFHRSLNPRSVARLSHRK*YLQ*PKSKRVTPVKRLSWQTEL 136
           T ++  FH  +    V  +SH+   LQ   + ++ P+K   W+TEL
Sbjct: 838 TNIMHVFHSDILQNRVRLISHK---LQGLPANKIFPIKNYEWETEL 880


>SB_28302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 273 TGLLCPFHRSLNPRSVARLSHRK*YLQ*PKSKRVTPVKRLSWQTEL 136
           T ++  FH  +  + V  +SH+   LQ   + ++ P+K   W+TE+
Sbjct: 13  TNIMHVFHSDILRKRVRLISHK---LQGLPANKIFPIKNYEWETEM 55


>SB_42984| Best HMM Match : DUF1651 (HMM E-Value=7.2)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 265 QTCSLHAESC*WSVHHGRSCVELPLLTRRAWL 360
           Q+   H   C W + +G S  EL  ++RR W+
Sbjct: 142 QSAKTHGCQCKWRLANGSSMTELNNVSRRIWI 173


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 189  VTGGIIYDVIVEPPSVGSTTDEMDTADL*PSCRIVLMVSTS 311
            +TGGI   V  E P   S         L PSC I  M+S+S
Sbjct: 1049 LTGGIKSGVFTEAPEASSLDTCTRACCLKPSCDISFMISSS 1089


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 364 NTRPHTQPDHTKTESNS 414
           N RPHT  DH+K ES +
Sbjct: 199 NPRPHTNADHSKPESGT 215


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 298  WSVHHGRSCVELPLLTRRAWLHNTRPHTQPDHTKTESNS 414
            W    GR+C  LP +    W+H   P+ + DH  T   S
Sbjct: 1816 WRTITGRTCNCLPEIRTNWWIH--PPYVRQDHPTTNITS 1852


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,418,088
Number of Sequences: 59808
Number of extensions: 415733
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)