Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30240
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040651-2|AAB95015.1|  154|Caenorhabditis elegans Hypothetical ...    30   1.5  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    28   6.1  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF040651-2|AAB95015.1|  154|Caenorhabditis elegans Hypothetical
           protein W04H10.2 protein.
          Length = 154

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 163 HWCYSLTFWLLEVLFTM**SSHRAWVQRPMKWTQQTCSLHAESC 294
           HW YS TF ++   F +  S  + +++   KWT   C+++  SC
Sbjct: 9   HWRYS-TFNIIWFSFFIQKSLDQFFLENCSKWTYSICTIYGNSC 51


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 430 VPMYFSVI-LYHLDIYAYEVARIFTELIV 513
           +P+  S+I LYH+  Y  E+ RIFT + +
Sbjct: 276 IPLLSSIISLYHIRPYRREILRIFTRVTI 304


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -3

Query: 110  YVWNF--QNCKRYCK*PFHF 57
            Y+WN+  +NCK + K PF F
Sbjct: 995  YIWNYTPENCKLFLKIPFFF 1014


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,370
Number of Sequences: 27780
Number of extensions: 316501
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)