Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30240
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29870.1 68417.m04251 expressed protein predicted protein, Ar...    74   9e-14
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...    71   8e-13
At2g19340.1 68415.m06034 membrane protein, putative contains 3 t...    71   8e-13
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    29   3.3  
At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste...    28   4.3  
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste...    28   4.3  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   7.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   7.5  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    27   7.5  
At1g16720.1 68414.m02005 expressed protein                             27   10.0 

>At4g29870.1 68417.m04251 expressed protein predicted protein,
           Arabidopsis thaliana, PIR2:T01282
          Length = 172

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = +3

Query: 78  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD 251
           IPF+ L  P +++K P++   PS MT FSL+LL+YFLV  G +YDVIVEPP +GST D
Sbjct: 31  IPFSFLRPPRLRLKLPSFT-LPSPMTVFSLILLTYFLVVSGFVYDVIVEPPGIGSTQD 87



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/82 (34%), Positives = 44/82 (53%)
 Frame = +2

Query: 257 GHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAFL 436
           G  RPV FM  RVNGQYI+EGL+            I+LD   +    K  +    +    
Sbjct: 91  GSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIMLDLALDKNRAKSVKASYATAGVS 150

Query: 437 CILVSFFTTWIFMRMKLPGYLQ 502
            I++++  + +F+R+K+PGYL+
Sbjct: 151 SIVIAYVMSMLFIRIKIPGYLR 172


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +3

Query: 78  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD 251
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQD 88



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +2

Query: 257 GHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAFL 436
           G  RPV FM  RVNGQYI+EGL+            ++LD   +    K  +         
Sbjct: 92  GTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAKSVKASYAVAGVS 151

Query: 437 CILVSFFTTWIFMRMKLPGYL 499
            I++++  + +F+R+K+PGYL
Sbjct: 152 SIVIAYVMSMLFIRIKIPGYL 172


>At2g19340.1 68415.m06034 membrane protein, putative contains 3
           transmembrane domains;
          Length = 200

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +3

Query: 78  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD 251
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQD 88



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 257 GHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILD 373
           G  RPV FM  RVNGQYI+EGL+            ++LD
Sbjct: 92  GTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLD 130


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 72  FAIPFTVLEIPNIKIK-KPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 209
           F +PFT + +  +  K K  W+       +  L + S+F++TG I++
Sbjct: 541 FTLPFTDMGLAVVTAKDKSMWIIFKPLTLSLWLTIASFFILTGAIVW 587


>At5g41080.2 68418.m04994 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 358

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 519 LAYN*FCKYPGNFIRINIQVVKNDTKI 439
           L++N   KYP +FI  ++QV K+D  +
Sbjct: 51  LSFNSAAKYPIDFIEFDVQVTKDDCPV 77


>At5g41080.1 68418.m04993 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 374

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 519 LAYN*FCKYPGNFIRINIQVVKNDTKI 439
           L++N   KYP +FI  ++QV K+D  +
Sbjct: 67  LSFNSAAKYPIDFIEFDVQVTKDDCPV 93


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 361 HNTRPHTQPDHTKTESNSPYLCGVP 435
           H   PHT P HT T    P  CG P
Sbjct: 87  HTPTPHT-PSHTPTPHTPPCNCGSP 110


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 361 HNTRPHTQPDHTKTESNSPYLCGVP 435
           H   PHT P HT T    P  CG P
Sbjct: 87  HTPTPHT-PSHTPTPHTPPCNCGSP 110


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 115 IFMFGISKTVNGIANSPSISLLLVQILTCYFXKNKT 8
           + +FGI +  N I++S  +S+L  +   CY  KN+T
Sbjct: 68  LLLFGIIQVTN-ISHSGHVSVLFERFSECYEQKNET 102


>At1g16720.1 68414.m02005 expressed protein
          Length = 598

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 372 SSIMKPSPPSEKRKLDARP 316
           SS   PSPPS+K+K   RP
Sbjct: 49  SSSPSPSPPSDKKKTKTRP 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,257
Number of Sequences: 28952
Number of extensions: 292639
Number of successful extensions: 619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)