Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30238
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   3.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.8  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   7.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.7  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 365 TEAGGFCGALRNVRSKYRSLSGPSPA 288
           T A     A+R V+SKY S+ G SPA
Sbjct: 491 TSAETTSSAIRKVQSKYPSMCGSSPA 516


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 589 PTAATAGCPPQPSPSRSETTIS 654
           PT+   G  PQPSPS S + +S
Sbjct: 462 PTSVLTGTSPQPSPSLSTSIMS 483


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 322 ERTFRKAPQKPPASVN-VWAHDPTTLRVV-WRYVQ-PTNEEEPLLGYKVRLWELDQDMS 489
           E   R +PQ P   +    + D T L V  W  ++ P +  +P++    R+W+ D D++
Sbjct: 328 ETDSRASPQLPKNDIQPAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSDDDIN 386


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +2

Query: 491 QRTIPLTDRAQTRGLHQQHHSGQVVQPSRAGLLQRRRRQDVLP 619
           QRT+PL +    +   ++ H  QV+  +   +++   ++ ++P
Sbjct: 40  QRTVPLVESGVEKEEEEEKHLQQVINEAHEAIVRGSEKKLIIP 82


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 428 LVGWTYRHTTRRVVGSWAHTLTEA 357
           L+ + Y   TRR+V  W +T+T++
Sbjct: 619 LIRYGYEEETRRLVYRWLYTITKS 642


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 428 TKKNLCSDIRCDYGSLTKT*AQRTIPLTDR 517
           T K++C   RC YG +  +  ++ + LTDR
Sbjct: 567 TFKSICERERCPYGVVGYSTVEQRLILTDR 596


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 597 GDGRMSSPTIAFQIGDYHFRSVRLLRE 677
           G  R++SP I F I  YH R  R+LRE
Sbjct: 455 GSWRLASPNIRFLITLYH-RLGRILRE 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,598
Number of Sequences: 5004
Number of extensions: 51877
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)