Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30238
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0293 - 42567564-42567751,42567905-42567994,42569028-425691... 31 1.1
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 30 2.0
11_04_0355 + 16705281-16706006 30 2.0
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 30 2.0
07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654... 29 2.6
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 29 4.5
03_05_0991 + 29522483-29522614,29523091-29523159,29523369-295234... 28 6.0
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 6.0
01_01_0355 + 2810340-2813112,2813213-2813637 28 6.0
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 7.9
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 7.9
>01_07_0293 -
42567564-42567751,42567905-42567994,42569028-42569195,
42569284-42569562,42569673-42569739
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 373 WAHDPTTLRVVWRYVQPTNEEEPLLG--YKVRLWELDQDMSTANDTIDRSSTN*RP 534
W +D L V+R NE + + YKVR + D D+ T ND ID RP
Sbjct: 156 WVNDTVAL-AVFRTPSAANEAQACIPPRYKVRPLKEDDDLLTKNDGIDLEPPTPRP 210
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 14 HLFGGGHAAVAPQLVSARSFNSTALNVTWNPIDQ 115
H FG G A ++V F + ++ VTW +D+
Sbjct: 302 HKFGAGFHRTADEVVKLGDFTTISVKVTWKAVDK 335
>11_04_0355 + 16705281-16706006
Length = 241
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 589 PTAATAGCPPQPSPSRSETTISEA 660
P AA+AG PP P P++ ET+ + A
Sbjct: 159 PPAASAGQPPPPPPNQEETSAAAA 182
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 353 GFCGALRNVRSKYRSLSGPSPAELNAITFT**YYLAGDQL*EP 225
G AL + Y LSGP P+ L +T+T Y+ G++L P
Sbjct: 254 GLMQALAVLDLSYNQLSGPIPSILGNLTYTEKLYMQGNKLTGP 296
>07_03_0670 +
20562188-20562923,20564288-20564826,20564967-20565458,
20566803-20567018
Length = 660
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -1
Query: 620 WGGHPAVAAVGVSQHAKVVRLARNDVADVGL*FVLDRSMVSFAVLM--SWSSSHNRTLYP 447
WGGHPA+A++ + + A + ARN D L L+ ++SSS + +
Sbjct: 79 WGGHPALASL-LLRRAPGLLAARNAALDTPLHLAARAGAHKVVALLVAAFSSSSSSSAAA 137
Query: 446 SRGSSSLVGWTYRHTTRR 393
S SL T R T RR
Sbjct: 138 DASSPSLRALT-RATNRR 154
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 353 GFCGALRNVRSKYRSLSGPSPAELNAITFT**YYLAGDQL 234
G AL + + LSGP P+ L +T+T YL G++L
Sbjct: 219 GLMQALAVLDLSFNQLSGPIPSILGNLTYTEKLYLQGNRL 258
>03_05_0991 +
29522483-29522614,29523091-29523159,29523369-29523410,
29524409-29524540,29524832-29525023,29525134-29525166
Length = 199
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/95 (24%), Positives = 35/95 (36%)
Frame = +1
Query: 91 RDLEPDRSVAREAARQADRPPSQVLETGEQRRGVHLLFVSNDSKLGSYSWSPAR*YYYVK 270
R L+ + AR+ A Q R V + + SN S GS+S R YY
Sbjct: 56 RALQMGKPCARQVA-QVRRSVDWVYSQFNKMQTTSWRNASNSSNRGSFSEDARRRYYQRM 114
Query: 271 VMAFNSAGEGPESERYLERTFRKAPQKPPASVNVW 375
+ E + R+++ F + K S W
Sbjct: 115 QQEYEEEQERVQRIRHMQSVFNRERNKFRRSYEAW 149
>03_02_0663 + 10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 59 SARSFNSTALNVTWNPIDQSRERLRGKLIGHRLKYWKQENKEEECIYYLSR 211
S ++ S +N+ N +D +R+ K + LK+ E+KE+E I LS+
Sbjct: 897 SRHTYMSRFINIYMN-VDNARKSYNMKRRKYHLKFLMDESKEDEAIGELSQ 946
>01_01_0355 + 2810340-2813112,2813213-2813637
Length = 1065
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 317 YRSLSGPSPAELNAITFT**YYLAGDQL 234
Y SLSGP P+E+ ++T L+G+QL
Sbjct: 503 YNSLSGPLPSEVGSLTSLNELILSGNQL 530
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 291 GRRPGKRAIL---GAHVPQGATEAPGLRQRVGPRPHHP 395
GRR G+R +L PQGA +A G R P H P
Sbjct: 61 GRRDGERRLLVYGDGSTPQGALQAAGALLRHPPVAHDP 98
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 328 TFRKAPQKPPASVNVWAHDPTTLRVVWRYVQPTNEEEP 441
+ R P+ P V AHD +T+R V V PT++ +P
Sbjct: 2015 SIRNIPRNPLVDA-VAAHDRSTMRKVSELVAPTDKSKP 2051
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,680,489
Number of Sequences: 37544
Number of extensions: 418331
Number of successful extensions: 1838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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