Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30238
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    29   3.8  
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    28   5.0  
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          28   6.6  
At1g30350.1 68414.m03711 pectate lyase family protein similar to...    27   8.7  

>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 353 GFCGALRNVRSKYRSLSGPSPAELNAI 273
           G C +L+++   + SLSGP P EL+ I
Sbjct: 279 GNCKSLKSLMLSFNSLSGPLPLELSEI 305


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 455 LYPSRGSSSLVGWTYRHTTRRVVGSWAHTLTEA 357
           L P+   SS  GWTYRH T +    W   L+++
Sbjct: 70  LTPTLPDSSFSGWTYRHCTFKT--PWCKLLSQS 100


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 128 LRGKLIGHRLKYWKQENKEEECIYYLSRT--TRNWALIVGLQPDNII 262
           L+G++   +   ++Q+ K  E   Y  RT  TR W  IV   PD I+
Sbjct: 64  LQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGIL 110


>At1g30350.1 68414.m03711 pectate lyase family protein similar to
           pectate lyase GP:14289169 from [Salix gilgiana];contains
           Pfam profile: PF00544: Pectate lyase
          Length = 368

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 35  AAVAPQLVSARSFNSTALNVTWNPID 112
           A  +P L +A S+N TA  V+ NPID
Sbjct: 14  AFASPLLETAHSYNVTAPRVSLNPID 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,860
Number of Sequences: 28952
Number of extensions: 295993
Number of successful extensions: 997
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)