Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30237
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.91 
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    28   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   6.4  

>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 67  HFVIRETKSKWPIMNRKPICLAWATHRLHKI 159
           HF IR  +S   + NR+ I L W T   HK+
Sbjct: 9   HFGIRTPRSVCHVRNRENIYLYWTTFDAHKL 39


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 533 TRMLFLQLRSIEPTEIFSDCSFQCTRCNSDSNGLHLCRSPCSKGYKHMG 387
           ++ L   LRS    ++  DC  +    +S + G++LC   CS  +++MG
Sbjct: 8   SQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLD-CSAAHRNMG 55


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/76 (25%), Positives = 27/76 (35%)
 Frame = +2

Query: 227 PPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIP 406
           PP    + P     P PT++S P  +    T    VP T T + +  L    C     +P
Sbjct: 400 PPTGNSTTPVTPTVP-PTSSSTPLTTTNCTTSTS-VPYTSTPVTSTPLATTNCTTSTSVP 457

Query: 407 YCTDSCKDANHYCPNC 454
           Y +           NC
Sbjct: 458 YTSTPVTSTPLTTTNC 473


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -3

Query: 680 LNLYITL*IKLCFYMYPQTHLDLFVLQGKKRYLF 579
           LNL I    KLC Y+Y   HLD  V   K  YLF
Sbjct: 183 LNLTIEA-SKLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 230 PAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALL 367
           P V YSC         T T CP C A  + + +     KT  F+ L
Sbjct: 803 PFVSYSCLHLVHRDCATETVCPKCKAGYLDKKNSHDQKKTSTFSEL 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,300
Number of Sequences: 5004
Number of extensions: 52692
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)