Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30237
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 33 0.24
11_06_0258 + 21750922-21752272,21752971-21753377 31 0.95
11_06_0257 + 21746643-21748091 31 0.95
06_03_0384 + 20174441-20175788,20176215-20176858 31 0.95
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 31 0.95
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 29 2.9
02_03_0221 - 16554910-16555560 29 2.9
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 29 5.1
02_05_1081 + 33971950-33972606 28 6.7
07_03_1406 + 26343915-26346032 28 8.9
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 28 8.9
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 8.9
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -3
Query: 596 KKRYLFSAMLSS*LKIELNNRTRMLFLQLRSIEPTEIFSD 477
K ++ FSA +S K ++N R L Q++S EPTE +SD
Sbjct: 224 KGQFSFSAFVSVSQKPNMDNLLRELLSQIKSNEPTESYSD 263
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 203 RSFRR-----PRAPPAVRYSCPAQQMGPEPTNTSCPSCSA 307
R+FRR P+ PP + YSC A GP+ CPS A
Sbjct: 49 RTFRRLRLPSPKQPPCLLYSCDA--YGPDAAGLYCPSTGA 86
>11_06_0257 + 21746643-21748091
Length = 482
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 203 RSFRR-----PRAPPAVRYSCPAQQMGPEPTNTSCPSCSA 307
R+FRR P+ PP + YSC A GP+ CPS A
Sbjct: 49 RTFRRLRLPSPKQPPCLLYSCDA--YGPDAAGLYCPSTGA 86
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 31.1 bits (67), Expect = 0.95
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 212 RRPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLF------ALLLC 373
RRP PP+ S P + G T T P+ +R H+ V + A+LLC
Sbjct: 246 RRPPPPPSPPPSHPHRSGGKNDTAT--PARRTRTRSRRKHLSVVTVAVVCGVVSVAMLLC 303
Query: 374 LIGCCPCACI 403
L+GC C +
Sbjct: 304 LVGCVACGVL 313
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 31.1 bits (67), Expect = 0.95
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +2
Query: 134 GLRTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAI 313
GL A+T + V P+ A +PG+S R P PA A G E + PS S +I
Sbjct: 1621 GLTEANTFATRVMNPNAAEFVPGQS-RSPNGNPASPNGPLASPGGTEASPHGLPSPSDSI 1679
Query: 314 V 316
V
Sbjct: 1680 V 1680
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 146 ASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRV 325
A++K+ S Q P T +++P +AP A + P P PT T+ P+ + A+ +
Sbjct: 86 ATSKAPSNQAPPT-QTVPAAP--ASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEA 142
Query: 326 DHVPVTKTHLFA 361
D+ ++L A
Sbjct: 143 DNYGQATSNLVA 154
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 359 ALLLCLIGCCPCACIPYC-TDSCKDA 433
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 146 ASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEPTNTSCPSCS-AAIVTR 322
+ST + P R+IP +P APPA S P P T S P+ + A T
Sbjct: 84 SSTAKEPTKQPSVDRAIPTAPATQPPAPPA-PVSEPVTAPVPTATTASAPAAAVTAASTE 142
Query: 323 VDHVPVTKTHLFA 361
D+ ++L A
Sbjct: 143 ADNYGQAASNLVA 155
>02_05_1081 + 33971950-33972606
Length = 218
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 212 RRPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHV 334
R PR P AV + P Q P P + +AA+ T++ V
Sbjct: 131 RAPRVP-AVAQAAPTDQKAPRPARSKQQQHTAAVPTKIKSV 170
>07_03_1406 + 26343915-26346032
Length = 705
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +2
Query: 185 ARSIPGRSFRRPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 364
A ++ GR RPR PP + PA T ++C AA R H ++ A
Sbjct: 9 AAAVKGRIKSRPRLPP---LASPA-------TTSTCAPAPAATARRGSHAAASQVVSHAS 58
Query: 365 LLCLIGCCP 391
LL + CP
Sbjct: 59 LLLRLQSCP 67
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 149 STKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEP 277
S + A ++ +A S+ GRSF P A RYS P Q P
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGP 380
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 386 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 288
++L E + GG SL+R +L +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,912,896
Number of Sequences: 37544
Number of extensions: 345515
Number of successful extensions: 1113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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