Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30237
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 33 0.32
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 1.7
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06) 29 3.9
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 29 3.9
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.2
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33) 29 5.2
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 28 6.9
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 32.7 bits (71), Expect = 0.32
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 386 CPCACIPYCTDSCKDANHYCPNCNAYI 466
CPC + YC +C +YCP C +I
Sbjct: 419 CPCGHV-YCCQTCASNLYYCPLCKTFI 444
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 386 CPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQL 496
CPC + +C+ C D +CP CN + + F +
Sbjct: 362 CPCGHLMFCS-RCADNMKFCPLCNESVNGNQKIYFAM 397
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 255 HNKWALSPRTLAALHAVRQSSPE 323
HN W SP++ A LH R SSP+
Sbjct: 826 HNAWTSSPQSPATLHNARTSSPQ 848
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 377 IGCCPCACIPYCTDSCKDANHYCPNCNAYI 466
I CP C P C+D C Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734
>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +2
Query: 392 CACIPYCT---DSCKDANHYCP 448
C C PYCT D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +2
Query: 392 CACIPYCT---DSCKDANHYCP 448
C C PYCT D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163
>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/24 (37%), Positives = 21/24 (87%)
Frame = +1
Query: 433 KPLLSELQRVHWKLQSLNISVGSI 504
KPL S +Q++H+K++++N+++ +I
Sbjct: 530 KPLNSLVQKIHFKMENINVALDAI 553
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Frame = +2
Query: 215 RPRAPPAVRYSCPAQQMGPEPTNTS------CPSCSAAIVTRVDHVPVTKTHLFALLLCL 376
R P A RY CP P+P + CP +A + ++ TH LC
Sbjct: 835 RVAGPCAERYYCPGANTRPDPPEFNCTIGHFCPGANAQPIPCQNNSFTKVTHAKECSLCP 894
Query: 377 IG-CCPCACIPYCTDSCKDANHYCP 448
G C A IP C +YCP
Sbjct: 895 AGYYCEVAGIPLI---CPQ-GYYCP 915
>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
Length = 283
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/24 (37%), Positives = 21/24 (87%)
Frame = +1
Query: 433 KPLLSELQRVHWKLQSLNISVGSI 504
KPL S +Q++H+K++++N+++ +I
Sbjct: 101 KPLNSFVQKIHFKMENINVALDAI 124
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 365 LLCLIGCCPCACIPYCTDSCKDANHYCPN 451
L C +GC P C P CT +C PN
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPN 468
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 215 RPRAPPAVRYSCPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVT 343
RP APP CP GP P P C+ + T + P T
Sbjct: 7 RPGAPPLATALCPTPCYGPVPHPLLRP-CAPPLATALSPPPAT 48
>SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 458 RCNSDSNGLHLCRSPCSKGYKH-MGNNLLGK 369
RC DSN + ++ C K Y++ G+NL GK
Sbjct: 3 RCEQDSNLRGILQTKCRKMYRYGQGSNLRGK 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,145,140
Number of Sequences: 59808
Number of extensions: 421319
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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