Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30237
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   5.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 400 YPLLHGLLQRCKPLLSELQRV----HWKLQSLNISVGSIDLNCKNNILVLLFNSILSYEL 567
           +P +H  LQ        L +V    H + QSLN +VG ++     NIL  + N+  + +L
Sbjct: 463 FPYVHDTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNIL-SMDNTQYNLDL 521

Query: 568 SI 573
           S+
Sbjct: 522 SL 523


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 690 QLMTEFIHYTVNKTLFLYVSSNTFRPIC 607
           +L+T+ I  T     FLY S N    +C
Sbjct: 65  KLVTDCIFVTSEPGYFLYTSKNDNEEVC 92


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 128 RQIGFLFIMGHFDLVSRITKCFIPELFN 45
           +Q+  +   GH D++ +  K  +PE+ N
Sbjct: 35  KQLHCILDRGHCDVIGKKIKELLPEVLN 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,139
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)