Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30237
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51920.1 68414.m05853 expressed protein                             29   3.2  
At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein si...    29   4.3  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   5.6  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   5.6  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   5.6  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    27   9.8  

>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 212 RRPRAPPAVRYS-CPAQQM-GPEPTNTSCPSCSAAIVTRVDH 331
           R PRAP + R   CPA     P P  + C  C++ IVT+  H
Sbjct: 32  RIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPIVTQTHH 73


>At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 438

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 10  EADVDAIHFYSSLNSSGIKHFVIRETKSKWP 102
           +A VDA+  YS+LNS G K   I   ++ WP
Sbjct: 241 DAQVDAV--YSALNSMGFKDVEIMVAETGWP 269


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
 Frame = +2

Query: 140 RTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEP---TNTSCPSCSAA 310
           +  S+ S S   P      P R   RP++PP  + S P  +  P P    N S  S SA 
Sbjct: 141 KPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRSPPPPPAKKNASKNSTSAP 200

Query: 311 I---VTRVDH-------VPVTKTHLFALLLCLIGCCPCAC 400
           +     + DH       V VT    F L      CC   C
Sbjct: 201 VSPAKKKEDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVC 240


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
 Frame = +2

Query: 140 RTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPAQQMGPEP---TNTSCPSCSAA 310
           +  S+ S S   P      P R   RP++PP  + S P  +  P P    N S  S SA 
Sbjct: 141 KPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRSPPPPPAKKNASKNSTSAP 200

Query: 311 I---VTRVDH-------VPVTKTHLFALLLCLIGCCPCAC 400
           +     + DH       V VT    F L      CC   C
Sbjct: 201 VSPAKKKEDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVC 240


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 410 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV 499
           C+  C + ++ CP C+  IG+Y   I + V
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERV 106


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 110 TENRFVWRGLRTASTKSAS 166
           T+NR  W+GLR  STK A+
Sbjct: 518 TKNRVKWKGLRFLSTKEAN 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,164
Number of Sequences: 28952
Number of extensions: 282516
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)