Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30236
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.7  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.6  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.8  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   6.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    24   8.4  

>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 194 FLPLFPLS*NRAWEPLMESTDPQCHNYST 108
           FLP F LS    +  L E TD Q H+YST
Sbjct: 14  FLPFF-LSMPMIFATLGEFTDDQTHHYST 41


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 121 WHW-GSVDSISGSHARFQLSGNSGRKHSRCCTSILRK 228
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 75 APCSFNFCSLRA 40
          +PCSF  CSLRA
Sbjct: 62 SPCSFTICSLRA 73


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 303 TSPVLDIAPGSDLFCFIWN*NA 368
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 403 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 308
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 327 ERCRERVMFSITSWRGGYHGSSSQRDT 247
           E  R+RV FS+TS  G     SSQ+ +
Sbjct: 77  EESRKRVSFSLTSNDGAKSDRSSQKSS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,890
Number of Sequences: 5004
Number of extensions: 25867
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)