Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30236
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0618 - 16262826-16263097,16263111-16263183                       27   4.6  
08_02_1290 - 25927667-25928950                                         27   6.1  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    27   6.1  
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981...    27   6.1  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    27   8.1  

>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  RIARREQKLKEHGASSCISGKRGRRC 112
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 326 SDVENG*CLASPHGVGATMAAAVNVTQCCRPLNFRSMLV--QQRLCFLPL 183
           S   +G  L +PH   A  A     T+C  P      LV   QRL  +PL
Sbjct: 307 SFANSGDLLVTPHSHSAAAAGVAITTRCLYPRRLAGRLVGAAQRLLHVPL 356


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 26  LYLRIARREQKLKEHGASSCISGKRGRR-CCNYGTGGLLT 142
           L L     +Q     G S CI+G   RR C N+  GG L+
Sbjct: 5   LLLPTDMEQQLFPTDGVSFCITGASFRRSCLNFSNGGWLS 44


>01_01_1215 +
           9815918-9816218,9816772-9816912,9816988-9817106,
           9817922-9818191,9818330-9818369,9818519-9818616,
           9818745-9818825
          Length = 349

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 154 SHARFQLSGNSGRKHSRCCTSILRKFSGRQHCVT-LTAAAMVAPTP*GD 297
           S +   LS  +GRK  R C+  + +++      T LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 118 LWHWGSVDSISGSHARFQLSGN---SGRKHS 201
           ++ WGS+D+    H+RF  S N   +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,885
Number of Sequences: 37544
Number of extensions: 191961
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)