Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30236
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      27   4.8  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   6.3  
SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3)                     27   8.3  
SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 302 LASPHGVGATMAAAVNVTQCCRPLNFRSMLVQQRLCFLPLF 180
           LASPHG  A +A A  VT      +  + L Q R C   +F
Sbjct: 534 LASPHGGEAPLAVAEMVTNSHTMTSLANFLAQFRHCEAKIF 574


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 416 FFFFFTSHRQIY*KFKC--ILIPNKTEKVRSW 327
           FFF+F   R+++   KC  + I N T+  RSW
Sbjct: 141 FFFYFKEARRVFENRKCSVVEIINFTDITRSW 172


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 356 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 261
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


>SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3)
          Length = 225

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 250 VTLTAAAMVAPTP*GDAKHHPFSTSLQDRTFSVLFGIKMHL 372
           +TLT  + V     GD  H P  ++ + R +  +F ++ HL
Sbjct: 102 ITLTLISRVGDIRMGDWNHGPLGSAERHREYQPVFLVRAHL 142


>SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 324  RCRERVMFSITSWRGGYHGSSSQRD 250
            +CR  V+F++ + +G  HG+SS  D
Sbjct: 952  QCRAEVIFTMPNLKGQCHGTSSNDD 976


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,012
Number of Sequences: 59808
Number of extensions: 207137
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)