Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30236
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    28   2.4  
U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    26   9.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 341 KVRSWSDVENG*CLASPHGVGATMAAAVNVTQCCRPLNFRSMLVQQRLCFLP 186
           K+  +  +EN   + +P G         N   C RP  F ++  QQR  F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438


>U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical
           protein T07E3.2 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 DLFCFIWN*NAFKFLINLSMRCKKKKKK 419
           DLF  I+N     F + L + CKKKK K
Sbjct: 4   DLFVIIFNFCIITFSVYLGIGCKKKKNK 31


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 65   EHGASSCISGKRGRRC---CNYGTGGLLTPL 148
            EH   SC+SG  G +C   C    G L  P+
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPI 1225


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 65   EHGASSCISGKRGRRC---CNYGTGGLLTPL 148
            EH   SC+SG  G +C   C    G L  P+
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPI 1225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,512
Number of Sequences: 27780
Number of extensions: 154205
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)