Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30236
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.73 
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    26   9.0  
At4g37190.1 68417.m05265 expressed protein                             26   9.0  
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c...    26   9.0  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 145 ISGSHARFQLSGNSGRKHSRCCTSILRKFSG 237
           +SGS+  FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 97  TRSAVL*LWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSG 237
           T    L  WH G  DS +   +    +GN+GR       S+L  ++G
Sbjct: 765 TLPVTLKAWHVGPTDSDNTMSSGRNAAGNTGRPKDGTSPSLLIHYAG 811


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 235 GRQHCVTLTAAAMVAPTP*GDAKHHPFSTSLQDRT 339
           GRQ+ V +  +AM APT  G    +   TSLQ  T
Sbjct: 353 GRQNIVAILDSAMPAPTLAGKQLENTLLTSLQALT 387


>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 188 PLFPLS*NRAWEPLMESTDPQCHNYSTADRVYH 90
           P  P+S + +  P M+S  P  H  S+A +V H
Sbjct: 46  PSIPVSSSSSSSPFMQSNLPPLHPSSSAQKVTH 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,904
Number of Sequences: 28952
Number of extensions: 143621
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)