Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30235
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.70 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.9  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   4.9  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   6.5  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 23/76 (30%), Positives = 40/76 (52%)
 Frame = +2

Query: 443 SCQSEN*RKGSSQAFF*PSKQNKSDHSVDIPKCKTEYNDKQRHYSVDSPSLDTKKKERLN 622
           S +SE   + S Q    PS   + D++    +  T    K++  + D PSL++  ++RLN
Sbjct: 225 SSESEVSEEESDQEMSEPSPIEE-DYNDTKARRITRKGTKKKTVTFD-PSLESVPQKRLN 282

Query: 623 SCSSLPSNIGNKRRMS 670
           + S++ SN   K R+S
Sbjct: 283 ASSNVSSNPAKKTRVS 298


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 536 KCKTEYNDKQRHYSVDSPSLDTKKKERLNSCSSL---PSNIGNKRRMSHKIVWIL 691
           K +++Y ++Q H    +PS D + +  + S S L    S   N    SH ++W L
Sbjct: 95  KSQSDYENQQSHNLPSTPSADAETQRNIGSLSVLDDTKSQYANYSSSSH-VLWHL 148


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 280 EESVESFRLFLELFHLV-KTSGFCFQNPS*NHVSNHLF*I--YHVCVYHPV 137
           E+ VE +   L   HL  +TSGFC +N +     N  F I  +   + HP+
Sbjct: 26  EQKVEEYLEVLNELHLTGRTSGFCMRNFTVEGAFNPKFQIRSFFAQLLHPI 76


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   EEKEDATAEKHLKPSEEKSKHDHQ 72
           E K  A  E  +K  E+KSKH+H+
Sbjct: 57  ELKRSADEEASVKRKEKKSKHEHK 80


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +2

Query: 38  SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIRNVISRRILKAK 217
           ++ K+   + T+ E+N +   E+     V  ++  M DT++ NL+K+  +  SR  L+ K
Sbjct: 141 AKWKEIAELKTQIEKNDQALSEKNHEVMVSNQALQMKDTNLTNLEKLFAD--SREQLETK 198

Query: 218 AGSLHEMKQ 244
              L   +Q
Sbjct: 199 CKELAAAEQ 207


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 497 SKQNKSDHSVDIPKCKTEYNDKQRHYSVDSPSLDTKKKE 613
           S +NK++ +  I K K+    K+   S++ P  + K+K+
Sbjct: 31  SLKNKTEENKTIDKHKSSVGPKEPKSSLEKPKANRKRKQ 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,032
Number of Sequences: 5004
Number of extensions: 43761
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)