Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30235
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13571| Best HMM Match : SNURF (HMM E-Value=2.8)                     38   0.011
SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20)                   31   0.98 
SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)             29   3.0  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   9.1  
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 28   9.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   9.1  

>SB_13571| Best HMM Match : SNURF (HMM E-Value=2.8)
          Length = 320

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +3

Query: 468 KDHHRHSSDHQSKTNQIIVLIFQNARLNIMINRDIIQWTHQVLTRKKRN 614
           +DH + S   +  +N++ VL+  + +LNI I RD  ++T  ++T K RN
Sbjct: 44  QDHLKVSFTAREDSNEVFVLLNGSRQLNIPITRDCTEFTRVIITTKPRN 92


>SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20)
          Length = 477

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 527 DIPKCKTEYNDKQRHYSVDSPSLDTKKKERLNSCSS 634
           D+ KC+ +YND+  + S D+P  +    E+   C +
Sbjct: 202 DMQKCEDKYNDRLENISKDNPRYERDMTEQFERCQA 237


>SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)
          Length = 378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 494 PSKQNKSDHSVDIPKCKTEYNDKQRHYSVDSPSLDTKKKERLNSCSSLPSNIGNKRRM 667
           P + NK +   +   C+ EYN+  R  + +    +  K +R+ + +  P    N +RM
Sbjct: 105 PGEYNKMEKVCNTNPCQGEYNNMDRVCNTNPCPGECNKMDRVCNTNPCPGEYNNMKRM 162


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 542  KTEYNDKQRHYSVDSPSLDTKKKERLNSC 628
            K + N+K++    DS + DTKKK + N C
Sbjct: 1449 KAKSNEKKKKSRKDSSNSDTKKKHKRNLC 1477


>SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 122 VYLKS--NGMIDTDMINLKKMIRNVISRRILKAKAGSL 229
           VYLK   N  +DT ++NL + +R+    R++K   G L
Sbjct: 174 VYLKGKVNKRVDTCLVNLMQYVRDKAFNRMIKMTKGKL 211


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 542 KTEYNDKQRHYSVDSPSLDTKKKERLNSCSSLPSNIGNK 658
           K + N+K++    DS + DTKKK +    SS P + GN+
Sbjct: 76  KAKSNEKKKKPRKDSSNSDTKKKHKRKGKSSGPDD-GNR 113


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 515 DHSVDIPKCKTEYNDKQRHYSVDSPS 592
           +++V IPK  +E   KQ+H S  SPS
Sbjct: 425 NYNVTIPKDASETETKQKHSSASSPS 450


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 5    RKKTPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIR 184
            R+KT +      R K+NL    R  R  ++  +RI+R     +S       +  L++ IR
Sbjct: 1192 RRKTRRFARRVQRHKRNLQKRLRRARRRRRLRKRIRRRRRQRRSRRYHRRQLRRLRRAIR 1251

Query: 185  NVISRR 202
              I R+
Sbjct: 1252 RKIQRK 1257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,975
Number of Sequences: 59808
Number of extensions: 294234
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)