Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30235
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p...    31   0.86 
U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical p...    29   2.6  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    29   4.6  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    28   6.0  
Z81457-6|CAE17710.1|  186|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL117204-9|CAB55124.1|  358|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    28   8.0  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    28   8.0  

>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical protein
            T12D8.9b protein.
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399  DKDSSLKPCENKHDVPVKVKTEEKD-HHRHSSDHQSKTNQ 515
            DKD  +K  E +H +  K+K  E + HH H S H  K +Q
Sbjct: 1021 DKDDDVKDNEERH-LKEKLKPVESERHHHHHSKHGKKKHQ 1059


>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical protein
            T12D8.9a protein.
          Length = 1181

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399  DKDSSLKPCENKHDVPVKVKTEEKD-HHRHSSDHQSKTNQ 515
            DKD  +K  E +H +  K+K  E + HH H S H  K +Q
Sbjct: 1019 DKDDDVKDNEERH-LKEKLKPVESERHHHHHSKHGKKKHQ 1057


>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
            protein T12D8.9b protein.
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399  DKDSSLKPCENKHDVPVKVKTEEKD-HHRHSSDHQSKTNQ 515
            DKD  +K  E +H +  K+K  E + HH H S H  K +Q
Sbjct: 1021 DKDDDVKDNEERH-LKEKLKPVESERHHHHHSKHGKKKHQ 1059


>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
            protein T12D8.9a protein.
          Length = 1181

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399  DKDSSLKPCENKHDVPVKVKTEEKD-HHRHSSDHQSKTNQ 515
            DKD  +K  E +H +  K+K  E + HH H S H  K +Q
Sbjct: 1019 DKDDDVKDNEERH-LKEKLKPVESERHHHHHSKHGKKKHQ 1057


>U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK682.7 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 417 KPCENKHDVPVKVKTEEKDHHRHSSDHQSKTNQI-IVLIFQNARLNIMINRD 569
           K  EN++  P + KT  KDHH  + ++  K  ++  +  F++A L  +I  D
Sbjct: 86  KLLENRNYQPPRRKTPSKDHHSKAEENSKKAKKLERINKFKDAVLTDLIEND 137


>Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical
           protein Y41E3.1a protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 438 DVPVKVKTEEKDHHRHSSDHQSKTNQIIVLIFQNARL-NIMIN-RDIIQW--THQVLTRK 605
           ++PVKV+T   D  RH  +  S+ +    L  Q   +  + IN  ++I +  TH  L  +
Sbjct: 51  EIPVKVRTVHSDRDRHKGEDSSEKHAETALQSQKCNIPKLEINGSEVINFFKTHAPLECQ 110

Query: 606 KRN 614
           K+N
Sbjct: 111 KKN 113


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 2   KRKKTPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKK 175
           ++KK  ++K+  S+  K       SER  K++ +RI R+   +K +   D+D   +KK
Sbjct: 72  RKKKLRKEKSRKSQRSKRKKR--ESERRKKERSKRIARSKKSIKRDRERDSDSSRIKK 127


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 71  RSE-RNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIRNVISRRIL 208
           RSE R+P  K +   R N+ +  +  +D+D I  K  I   + RR L
Sbjct: 135 RSESRSPSPKRDLQLRANISVSYSSPLDSDSIKCKNYILGSVKRRDL 181


>Z81457-6|CAE17710.1|  186|Caenorhabditis elegans Hypothetical
           protein C01G12.9 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 426 ENKHDVPVKVKTEEKDHHRHSSDHQSKTNQIIVLIFQNARLNIMINRDIIQWTHQVLTRK 605
           EN  ++  K KT+EK    HSS+ +    Q++     +   NI + + I++   Q L R+
Sbjct: 59  ENMVEMIAKTKTDEKTSTTHSSEEEIGDVQLV-----DEDPNIAVKKQIVKKRAQELARQ 113

Query: 606 KR 611
           ++
Sbjct: 114 RQ 115


>AL117204-9|CAB55124.1|  358|Caenorhabditis elegans Hypothetical
           protein Y116A8C.18 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 2   KRKKTPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNV 124
           KRK   Q K+  S+L++NL ++  ++ + + + ER+ ++ V
Sbjct: 182 KRKSDKQLKDLQSKLERNLELVELNKLHEEVQSERLLKSEV 222


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 14   TPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIRNVI 193
            TP Q+NT S   K  S    + +  +K+ + ++   +  K N  ID D + + K+I +  
Sbjct: 1047 TPMQRNTRSTSSKTSSSSMENHKRTRKENQMLKLQELEDKRN-RIDYDNLQIGKVITDDN 1105

Query: 194  SRRILKA 214
             R  + A
Sbjct: 1106 RRNFVLA 1112


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 14   TPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIRNVI 193
            TP Q+NT S   K  S    + +  +K+ + ++   +  K N  ID D + + K+I +  
Sbjct: 1047 TPMQRNTRSTSSKTSSSSMENHKRTRKENQMLKLQELEDKRN-RIDYDNLQIGKVITDDN 1105

Query: 194  SRRILKA 214
             R  + A
Sbjct: 1106 RRNFVLA 1112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,634
Number of Sequences: 27780
Number of extensions: 241677
Number of successful extensions: 1047
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)