Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30235
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    30   1.4  
At5g16320.1 68418.m01908 expressed protein                             30   1.9  
At1g71015.1 68414.m08194 expressed protein                             29   2.4  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   3.2  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    29   4.3  
At5g13340.1 68418.m01535 expressed protein                             29   4.3  
At3g10120.1 68416.m01214 expressed protein                             28   5.7  
At3g28770.1 68416.m03591 expressed protein                             28   7.5  
At5g16610.2 68418.m01945 expressed protein                             27   9.9  
At5g16610.1 68418.m01944 expressed protein                             27   9.9  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 623 NSDVPFFSCQDLVSPLNNVSVYHYIQSCILEYQH 522
           N+    FSC+  +SPL   + ++Y ++C +E+ H
Sbjct: 131 NTKFDCFSCRKHMSPLTYHNYHYYCKTCDMEFHH 164


>At5g16320.1 68418.m01908 expressed protein
          Length = 470

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 536 KCKTEYNDKQRHYSVDSPSLDTKKKERLNSCSSLPSNIGNKRRMSH 673
           K K  ++D Q H S+ SPS      E  +  SSL S++ ++ R+ H
Sbjct: 20  KLKKAFDDLQAHRSLLSPSFSLSWSEIDSHFSSLQSSLASRFRLLH 65


>At1g71015.1 68414.m08194 expressed protein
          Length = 195

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = +2

Query: 497 SKQNKSDHSVDIPKCKTEYNDKQRHYSVDSPSLDTKKKERLNSCSSLPSNIGNK 658
           S+++ SD SV   K KTE ND++R  S     L   K E+L   S   S+  NK
Sbjct: 104 SRRSSSDLSV--MKKKTEVNDEEREVSSVKLKLPKWKIEKLRKESESGSDFSNK 155


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 8   KKTPQQKNT*SRLKKNLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDMINLKKMIRN 187
           K  PQ K T SR  +N  ++      PKK   ++  +N +  S+     +    K+  R 
Sbjct: 256 KPVPQPKKTISRKPQNRLLVEAESAKPKKSVRKVPASN-FESSSVQTSFEFEKPKRSFRK 314

Query: 188 VISRRI 205
           V S+ I
Sbjct: 315 VSSQSI 320


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1165

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 393  DQDKDSSLKPCENKHDVPVKVKTEEKDH 476
            D++K+SSL   E K+DVPV+V  +E +H
Sbjct: 1087 DKNKNSSL---EAKYDVPVEVSFQEPEH 1111


>At5g13340.1 68418.m01535 expressed protein
          Length = 242

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 396 QDKDSSLKPCENKHDVPVKVKTEEKDHHRHSSDHQSKTNQIIVLIFQNARLNI 554
           +D+ SSL P E++  + VK + E+K   +H ++ +    +    I +  R N+
Sbjct: 56  RDRSSSLSPSEHRIAIEVKKEQEDKARLQHEAELKRLEEETAQRIEEAVRKNV 108


>At3g10120.1 68416.m01214 expressed protein
          Length = 173

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +2

Query: 17  PQQKNT*SRLKKNLSMITRSERNPKKKEERIQR-----TNVYLKSNGMIDTDMINLKKMI 181
           PQ+ N+   +KK +  +  +    +K+E+   R      N   K+NG++   M+  K+ +
Sbjct: 69  PQETNSIKHMKKTMKKVRFANPEVEKEEQEEDRLTDCCDNTKEKTNGVVRVKMVVSKQEL 128

Query: 182 RNVISRRILKAKAGSLHEM 238
             ++       + GS+HEM
Sbjct: 129 EKLL-------QGGSVHEM 140


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 393 DQDKDSSLKPCENKHDVPVKVKTEEKDHHRHSSDHQ 500
           D  KD+SL   ENK DV  KV   E D +     HQ
Sbjct: 510 DSTKDNSL---ENKEDVKPKVDANESDGNSTKERHQ 542


>At5g16610.2 68418.m01945 expressed protein
          Length = 673

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 53  NLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDM 160
           +L  ++ S +NP+K+ +R+QR  + L  N +  T +
Sbjct: 238 SLPEVSSSNKNPRKRVKRVQRNPLPLNENEIQSTQV 273


>At5g16610.1 68418.m01944 expressed protein
          Length = 529

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 53  NLSMITRSERNPKKKEERIQRTNVYLKSNGMIDTDM 160
           +L  ++ S +NP+K+ +R+QR  + L  N +  T +
Sbjct: 94  SLPEVSSSNKNPRKRVKRVQRNPLPLNENEIQSTQV 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,042
Number of Sequences: 28952
Number of extensions: 213578
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)