Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30234
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 30 0.28
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 1.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.5
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 26 5.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 7.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 159 RGLLGDGNNEPYDDFRLPNGKI-CTSESEFGNATVWPAAVHRCKRPNTP 302
RG+L D +N DDF L N +I SE EF V+ + N P
Sbjct: 38 RGILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTIVYVENLQTTTEANIP 86
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 344 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGR 481
++ GG L L+L M + ++ A ++ + DAA DL ++GR
Sbjct: 1085 ELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGR 1130
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +3
Query: 231 SESEFGNA---TVWPAAVHRCKRPNT--PITSCTMHPSPPPANRSSGEYRRSGPCHCSWT 395
S S GNA +P A +RPN+ P + TM+ SPPP S Y + P + +
Sbjct: 59 SSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPP----SSNYNTAKPPYQTSQ 114
Query: 396 CRLSDKRVFTPSPAQTP 446
+ + P P+ P
Sbjct: 115 FYARPQSSYAPPPSGRP 131
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 641 SVVSTDRIISACLLGTLNS*LSPMSLGLSASVHLTHTFGSTAG 513
S VST S+ + +S S +S L++S+ T TFGST+G
Sbjct: 727 SSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSG 769
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 94 SSAHLNLRCATLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRPSGPQL 273
SSA + +T ++T + A S TTS T TS L +A A+S + S
Sbjct: 174 SSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLN 233
Query: 274 STGASARTLPS 306
ST ++ T S
Sbjct: 234 STTSATATSSS 244
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 81 YGLMVFCTSKLEVCYIEANGFYLGK 155
+ + C+ L VC+ A+G ++GK
Sbjct: 155 FSIKTLCSKSLAVCFSVASGLWVGK 179
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 264 PAAVHRCKRPNTPITSCTMHPSPPPAN-RSSGEYRRSGPCHCSWTCR--LSDKRVFTPSP 434
P+ +++ + P P+ M PPP + SSG Y ++ + ++T L P P
Sbjct: 130 PSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLP 189
Query: 435 AQTPLKI 455
P ++
Sbjct: 190 VPPPRRV 196
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 396 CRLSDKRVFTPSPAQTPLKICTKLV 470
C R+FT PAQ P C K++
Sbjct: 39 CESCVDRIFTTGPAQCPTPGCNKIL 63
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/70 (25%), Positives = 26/70 (37%)
Frame = +3
Query: 174 DGNNEPYDDFRLPNGKICTSESEFGNATVWPAAVHRCKRPNTPITSCTMHPSPPPANRSS 353
DG D + L + K C SE A+ W C++P+ + S P A +S
Sbjct: 365 DGETNLKDKYALCSTKCCKSEYRCSAASFWV----ECEQPHADLYSLNGVVKAPGAVQSP 420
Query: 354 GEYRRSGPCH 383
E H
Sbjct: 421 SESTNGRKIH 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,134
Number of Sequences: 5004
Number of extensions: 60549
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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